FFCP PHASE1:Hg19::chr9:137734487..137734510,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1289 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=2209 | |||
|TSSclassifier=not | |||
|UniProt= | |||
|association_with_transcript=392bp_to_BC032405_5end | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_5_at_COL5A1_5end | |||
|id=chr9:137734487..137734510,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.70e-33!180;CL:0000057!6.50e-20!75;CL:0000144!1.49e-11!625;CL:0000680!6.31e-11!57;CL:0000056!6.31e-11!57;CL:0000355!6.31e-11!57;CL:0000183!6.54e-11!59;CL:0002371!1.07e-10!591;CL:0000187!4.12e-10!54;CL:0000222!7.17e-10!119;CL:0000393!1.59e-08!60;CL:0000211!1.59e-08!60;CL:0002334!2.61e-08!12;CL:0000548!2.98e-08!679;CL:0000004!2.98e-08!679;CL:0000255!2.98e-08!679;CL:0000048!3.69e-08!430;CL:0000012!7.49e-08!682;CL:0000192!7.81e-08!42;CL:0000514!7.81e-08!42;CL:0000723!1.43e-07!436;CL:0000499!3.06e-07!27;CL:0000034!3.35e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000349;8.25e-14;19!CL:0000134;7.78e-11;55!CL:0002334;9.00e-11;12!CL:0000048;1.07e-08;58!CL:0000723;1.26e-08;61!CL:0000057;9.25e-08;73!CL:0000499;1.43e-07;28!CL:0002620;2.35e-07;23!CL:0000034;3.10e-07;69!CL:0002320;4.85e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.04e-20,76;CL:0000048,6.65e-16,427;CL:0000723,3.74e-15,433;CL:0000034,3.42e-14,441;CL:0000349,5.42e-14,19;CL:0002334,1.36e-10,12;CL:0002320,2.79e-10,361;CL:0000134,9.35e-10,354;CL:0000219,5.74e-09,386;CL:0000192,1.38e-08,43;CL:0000514,1.38e-08,43;CL:0000187,4.30e-08,55;CL:0000680,4.97e-08,58;CL:0000056,4.97e-08,58;CL:0000355,4.97e-08,58;CL:0000499,1.98e-07,28;CL:0002620,3.19e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!3.72e-11!63;UBERON:0001015!3.72e-11!63;UBERON:0000383!3.72e-11!63;UBERON:0001134!4.95e-11!61;UBERON:0002036!4.95e-11!61;UBERON:0003082!4.95e-11!61;UBERON:0000914!3.06e-10!83;UBERON:0002329!3.06e-10!83;UBERON:0003077!3.06e-10!83;UBERON:0003059!3.06e-10!83;UBERON:0007282!3.06e-10!83;UBERON:0009618!3.06e-10!83;UBERON:0007285!3.06e-10!83;UBERON:0004290!7.15e-10!70;UBERON:0005256!9.14e-09!143;UBERON:0004872!1.34e-08!84;UBERON:0000486!1.53e-08!82;UBERON:0000478!1.84e-08!24;UBERON:0005631!3.67e-08!14;UBERON:0000158!3.67e-08!14;UBERON:0004923!4.45e-07!57;UBERON:0002049!5.44e-07!79;UBERON:0007798!5.44e-07!79;UBERON:0000490!7.36e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.86e-11;24!UBERON:0005631;2.78e-09;10!UBERON:0000158;2.78e-09;10!UBERON:0003688;7.75e-08;6!UBERON:0002358;7.75e-08;6!UBERON:0003684;7.75e-08;6!UBERON:0001178;7.75e-08;6!UBERON:0002384;7.78e-08;198!UBERON:0004457;1.44e-07;9!UBERON:0000042;1.44e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,1.37e-11,24;UBERON:0002384,6.96e-11,371;UBERON:0005631,1.37e-09,14;UBERON:0000158,1.37e-09,14;UBERON:0001134,1.19e-08,62;UBERON:0002036,1.19e-08,62;UBERON:0003082,1.19e-08,62;UBERON:0007503,1.70e-08,78;UBERON:0007524,3.87e-08,73;UBERON:0002385,4.08e-08,64;UBERON:0001015,4.08e-08,64;UBERON:0000383,4.08e-08,64;UBERON:0002329,8.61e-08,71;UBERON:0003059,8.61e-08,71;UBERON:0007282,8.61e-08,71;UBERON:0004290,8.61e-08,71;UBERON:0009618,8.61e-08,71;UBERON:0003688,8.94e-08,6;UBERON:0002358,8.94e-08,6;UBERON:0003684,8.94e-08,6;UBERON:0001178,8.94e-08,6;UBERON:0005256,1.41e-07,122;UBERON:0003077,1.46e-07,72;UBERON:0007285,1.46e-07,72;UBERON:0004871,1.67e-07,8 | |||
|phase1_expression=7.81217030863394,7.92171938396638,5.92008497203079,2.00146596706261,2.68176656656373,6.97870819280295,0,1.26343974685366,0,0,0,3.9319446983431,3.9565046734268,0.123766352960047,0.662794751455832,1.34465029290355,0,0.730310090387373,1.46379839637152,1.10808952269109,1.02000345622126,2.19418305034661,0.572471974262113,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0.670700859703636,3.06870148424473,3.2529523714611,3.50936537445123,3.0417768981773,8.74814541756209,13.6257763684738,0.567208902984407,2.88248216701333,2.0202000709419,0.130979075497713,0,0,0,0,0,0,0,0,0.39752481473341,0,0,0,0.419499436209906,0.825354125820202,0.626984899610432,0.258416759169329,0,0.66944122552934,0.402829317109147,0,0,0,2.43042584364528,0.357198913136319,0,0,0,0.949265659568129,0.916008719652036,0,0,0,9.93943903390637,3.29239330327907,1.05927344650575,7.45775213946916,3.54668382198357,2.24271040056923,7.47242970107935,4.68668341992604,0.311211035399766,0.538842688278752,1.14423332179421,2.72443369760877,2.30470369792,0,0.312160076830321,0,0,0.117434498643765,0,0,0.204154171254893,0.122834317311768,0.309977343527296,2.37600571456411,1.97813543422845,0,2.15585442544872,0.505008341862199,0,0,0.877955241761676,2.75839016219118,0.45071417671979,1.92834711372036,5.91985797773244,5.12537733164562,5.51022943014861,4.20127534518163,1.13357782162283,3.09168648054755,3.16398655763703,10.2953562667172,2.33848812386877,3.02920529092937,3.68199594569197,4.84938170456436,6.74518225781567,2.41805035746337,0.847802961552438,0,0.272746120590835,0,0,0,0.348581828608555,0.10366105501537,0.252320850875628,0,0,3.21620469096443,1.38134921352481,0.928735856063958,0,0.828147600278907,0.674338760312407,0,0.441175890929576,0.217879444092406,0.237270619111097,0.134831308160164,0,0,0,2.80483547606892,4.115740113314,8.82052268313252,0,0,0,0,0,1.02940686179115,0.109750285408626,0,0,0,0.977424915930974,1.03993478527958,0,0,2.46558257895225,0,0,0,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.448524337381443,0.87192013766656,0.51336800074665,6.72212921940444,0,2.535908257668,3.72313363218819,0,0,0,0,6.71996570193294,32.5572963234866,2.46972101034231,1.30294473717494,4.26470338491055,0,1.50719688529793,0,0.799783929456456,0,0,0,3.83399768786532,1.14861935834114,1.42636905040718,2.46128221334885,0.821905290201534,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,1.2269149171914,0,0,3.74347550755453,4.10386674233472,2.99634588564476,1.17141414992713,0.902838299183157,4.5481500811197,1.03473071292505,3.32112799267718,1.84369168541703,0.60818530127658,2.34961388955289,3.0882908142977,0,0,0,0.606255142892519,9.98612637062982,6.04780586659361,13.397821622214,20.5639044206004,13.7523446272206,9.61043619417757,7.67560873600055,19.1416166160893,10.3892646511494,1.23367755042124,1.59805552781814,0.410635780069046,1.03850885836724,1.04589340613963,0,0.200506470303285,0.0920809889358963,2.41110341145674,1.0925470080403,1.04899531967539,0,0.0770153371044148,0,0,0.211103257785751,1.13733384070897,0.340187410553031,1.29549549661284,1.54227252690289,0,1.00337954770971,0,0,0,0,0,0,0.656029291399411,0.325378394664303,0,0.54941678891006,0.990113999047056,0.574265537996172,0,6.42735719376638,0.48335359146061,0.308097234229289,0.614014698904518,0.689182862422653,2.0409846524972,0.870100163485371,0.170453254832202,2.75999310504886,0.165284915360978,0.192190067365106,0.893288987462089,0.10115778085555,1.85938219718914,5.98143458978216,0,0,1.06461206063404,0,0.74129687641568,0,2.60510858551767,1.89827654831236,1.33441135746677,1.535386747868,1.28381696410176,0.636406495851874,3.13979456079692,1.79872457583315,1.92175920815238,1.17812402345686,1.41527737101321,0,0,0,0.487426979262569,0,2.32049849393576,4.24216295861138,1.13008116620243,1.65409603063837,1.32687795048244,0.876901770507525,2.89387767133344,1.9676842561399,2.43492452355245,0.92947049429925,0.845086807596724,1.43411352204052,5.69844437876103,2.85336841185,0,1.68886108238131,1.31717957183961,0.379473173765715,0.699869440489966,0,0,0,0,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0.144269212976445,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.1623345421307,4.75143489332222,3.99308912729002,0,0,0.333926115068718,0,0,0.398495976502139,0,0,1.73856760253663,0.123084805461069,5.28767299025073,0,0,0,0.197286811273867,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0,0,0.139423744278603,1.00035336054936,2.84855139617503,0,0,0,6.06102203490647,2.74792780205587,12.7928346244472,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0,4.01288823649394,0,0,0,0,0,1.20990716048664,0.30607276163049,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0.687944129886466,0.19351266257817,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| |||
|short_description=p5@COL5A1 | |||
}} |
Revision as of 04:01, 23 January 2014
Short description: | p5@COL5A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL5A1_5end |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | 392bp_to_BC032405_5end |
EntrezGene: | COL5A1 |
HGNC: | 2209 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.04e-20 | 76 |
multi fate stem cell | 6.65e-16 | 427 |
somatic stem cell | 3.74e-15 | 433 |
stem cell | 3.42e-14 | 441 |
extraembryonic cell | 5.42e-14 | 19 |
preadipocyte | 1.36e-10 | 12 |
connective tissue cell | 2.79e-10 | 361 |
mesenchymal cell | 9.35e-10 | 354 |
motile cell | 5.74e-09 | 386 |
smooth muscle cell | 1.38e-08 | 43 |
smooth muscle myoblast | 1.38e-08 | 43 |
muscle cell | 4.30e-08 | 55 |
muscle precursor cell | 4.97e-08 | 58 |
myoblast | 4.97e-08 | 58 |
multi-potent skeletal muscle stem cell | 4.97e-08 | 58 |
stromal cell | 1.98e-07 | 28 |
skin fibroblast | 3.19e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 1.37e-11 | 24 |
connective tissue | 6.96e-11 | 371 |
extraembryonic membrane | 1.37e-09 | 14 |
membranous layer | 1.37e-09 | 14 |
skeletal muscle tissue | 1.19e-08 | 62 |
striated muscle tissue | 1.19e-08 | 62 |
myotome | 1.19e-08 | 62 |
epithelial vesicle | 1.70e-08 | 78 |
dense mesenchyme tissue | 3.87e-08 | 73 |
muscle tissue | 4.08e-08 | 64 |
musculature | 4.08e-08 | 64 |
musculature of body | 4.08e-08 | 64 |
somite | 8.61e-08 | 71 |
presomitic mesoderm | 8.61e-08 | 71 |
presumptive segmental plate | 8.61e-08 | 71 |
dermomyotome | 8.61e-08 | 71 |
trunk paraxial mesoderm | 8.61e-08 | 71 |
omentum | 8.94e-08 | 6 |
peritoneum | 8.94e-08 | 6 |
abdominal cavity | 8.94e-08 | 6 |
visceral peritoneum | 8.94e-08 | 6 |
trunk mesenchyme | 1.41e-07 | 122 |
paraxial mesoderm | 1.46e-07 | 72 |
presumptive paraxial mesoderm | 1.46e-07 | 72 |
somatic layer of lateral plate mesoderm | 1.67e-07 | 8 |