FFCP PHASE1:Hg19::chrX:13752802..13752812,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8481 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2567 | |||
|TSSclassifier=strong | |||
|UniProt=E9KL37,O75665 | |||
|association_with_transcript=-19bp_to_ENST00000380550,NM_003611,uc004cvp.3,uc004cvq.3,uc004cvr.3,uc004cvs.3,uc004cvu.3,uc004cvv.3,uc010nen.2,uc011mil.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_OFD1_5end | |||
|id=chrX:13752802..13752812,+ | |||
|ontology_enrichment_celltype=CL:0000791!7.74e-13!18;CL:0000789!7.74e-13!18;CL:0002420!7.74e-13!18;CL:0002419!7.74e-13!18;CL:0000790!7.74e-13!18;CL:0000084!6.77e-10!25;CL:0000827!6.77e-10!25;CL:0000625!6.28e-08!11;CL:0000624!6.76e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.34e-52;18!CL:0000789;9.34e-52;18!CL:0002419;9.34e-52;18!CL:0000084;8.71e-37;25!CL:0000624;2.35e-33;6!CL:0000625;1.17e-25;11!CL:0000542;1.32e-11;53!CL:0000898;1.87e-11;3!CL:0000895;3.25e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.67e-52,18;CL:0000789,6.67e-52,18;CL:0002420,6.67e-52,18;CL:0002419,6.67e-52,18;CL:0000790,6.67e-52,18;CL:0000084,6.85e-37,25;CL:0000827,6.85e-37,25;CL:0000624,1.05e-33,6;CL:0000625,1.46e-25,11;CL:0000838,4.34e-20,52;CL:0000542,1.13e-19,53;CL:0000051,1.13e-19,53;CL:0000898,1.29e-11,3;CL:0000810,3.00e-09,1;CL:0000895,3.00e-09,1;CL:0002436,3.00e-09,1;CL:0002427,3.00e-09,1;CL:0002428,3.00e-09,1;CL:0002429,3.00e-09,1;CL:0002433,3.00e-09,1;CL:0002431,3.00e-09,1;CL:0002432,3.00e-09,1;CL:0002087,7.21e-08,115;CL:0000738,1.35e-07,136;CL:0002031,1.85e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;9.34e-52;18!CL:0000051;1.32e-11;53!CL:0002427;3.25e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.05e-16;2!UBERON:0005058;1.05e-16;2!UBERON:0009113;1.05e-16;2!UBERON:0004177;3.23e-07;5!UBERON:0005057;3.23e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,3.75e-18,4;UBERON:0005058,3.75e-18,4;UBERON:0009113,3.75e-18,4;UBERON:0003295,3.75e-18,4;UBERON:0005562,3.75e-18,4;UBERON:0003351,2.67e-12,6;UBERON:0004177,1.28e-10,7;UBERON:0005057,1.28e-10,7;UBERON:0000974,1.39e-07,10;UBERON:0003408,1.39e-07,10;UBERON:0001042,1.39e-07,10;UBERON:0009145,1.39e-07,10;UBERON:0006562,6.18e-07,11;UBERON:0009722,6.18e-07,11;UBERON:0007690,6.18e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0.123121058076788,0,0,0,0.273748850145768,0,0,0.0821005894499457,0.157421562627358,0,0,0.154816123316076,0,0,0,0,0,0,0,0.200544447470142,0.651032612147555,0,0.32389366601898,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,1.70763890732835,0,0,0,0,0.526768169550154,3.14735632182133,3.93010762749165,1.85041349099558,0.501559486172034,1.95553359980154,0,3.89653456815823,0.668462741311041,0.883817722424512,1.99380505125259,1.62482318259009,0.512365278902701,0.520237390239513,0,0,0.289803085735052,3.55887751588945,3.21048993707656,2.09071047609954,0.566546713487831,1.53288197440768,1.37450978193052,3.28925599625354,1.27426165729639,3.25541726928209,0,1.80690142893327,0.895906278080929,2.49861453104692,1.18388626022008,0,0.80642697289893,0.267440195783507,1.44824403882799,0,0,0,0,0,0.144846518960824,0,0,0.850813354476611,0,0.175669571386252,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0,0.367663080345869,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0.103325781175765,0,0.247266929278557,0,0,0,0.250237039743928,0,0,0,0,0,0,0,0,0.300091096084402,0,0.257640540045629,0,0,0,0.504867548488229,0,0,0,0,0,0.193260853163297,0,0,0.243947412259191,0.265059536642971,0.232387885739037,0.10366105501537,0,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.6487785964879,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0.790204397959275,0,0,0,0.148631162288728,0,0.16798212819886,0,0.358234090811393,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0.646882724578552,0.513372145118994,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0.620304078368662,0.647142602455851,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,0,0,0,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,0.522870902049801,0,0,0,0,0,0,0,0,0,0,0,0.307007349452259,0.137836572484531,0,0.290033387828457,0.0852266274161009,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0,0,0.379473173765715,0,0.0962221127255121,0,0,0,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0.79312517629427,0,0,0.245040215981032,0,0,0.355709216742071,0.159426272728822,0.199579371432817,0,0,0,0.280797178113459,0.228234679033192,0.313359791546046,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0.284136146806413,0,0,0,0.994147647766298,0.281338832821026,0.222617410045812,0,0.211125408127993,0,0.552567831062295,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0.1137934482855,0,0,0,0.291604613383254,0,0,0.241192877250816,0,0.110579259931225,0,0,0.10893846351899,0,0.153900517007594,0,0,0.179515288819544,0,0,0,0,0,0.156980256395025,0,0.225595660617181,0,0.167821586975843,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0.391329237864179,0,0,0,0.30607276163049,0.063186579628488,0.300646838828985,0.103688191397247,0,0,0.313932918407225,0,0.284609546029793,0,0,0.0979923974143777,0.0870592065804026,0,0.171986032471617,0,0.0730893170861856,0.0821154570532092,0.0969890164884194,0,0.451961481561065,0,0,0.0633107959558787,0,0.0801588202515337,0.213452994739353,0,0,0.114536596165916,0.171594997861965,0,0,0.235694034616795,0.135904206073614,0,0.101998217636322,0,0.600420288709789,0,0,0,0,0,0.229160424011684,0,0,0,0,0,0,0,0.0787831823072236,0,0.13480708770837,0,0,0,0,0.160753148465019,0,0.415440338029185,0,0,0.0607495566580247,0,0.236417121897595,0.0524545881349981,0,0.179287339332845,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0.314408610199332,0,0.496166021811951,0,0.243585196761792,0,0,0,0,0,0.628216385000937,0,0.122026264901963,0.1251909307065,0,0.554645257684261,0.18628920882415,0.415045904808692,0.124980407962107,0.151649117541648,0,0,0.936669811613763,1.01444720027578,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0.194860308839388,0.132864840313363,0.327130788511688,0,0,0,0,0,0,0,0,0.139879507719444,0,0.255788742607303,0,0.471797825567689,0.109209638192014,0,0.212574920101683,0.247871528518004,0,0,0.23658523500376,0,0,0,0.128458450192919,0,0,0,0.252071696221718,0,0,0,0,0.11796972334774,0,0.115525666150338,0,0,0,0.150420656698515,0,0,0.261906694481422,0.49131575253029,0.147856086217045,0,0,0,0.0634158101939068,0,0,0,0,0,0,0.672567444437648,0.606965604236632,0,0,0,0,0.135939465953663,0.197318320688547,0,0.111231401892069,0.07849309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| |||
|short_description=p4@OFD1 | |||
}} |
Revision as of 04:51, 23 January 2014
Short description: | p4@OFD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_OFD1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -19bp_to_ENST00000380550, NM_003611, uc004cvp.3, uc004cvq.3, uc004cvr.3, uc004cvs.3, uc004cvu.3, uc004cvv.3, uc010nen.2, uc011mil.1_5end |
EntrezGene: | OFD1 |
HGNC: | 2567 |
UniProt: | E9KL37O75665 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.67e-52 | 18 |
alpha-beta T cell | 6.67e-52 | 18 |
immature T cell | 6.67e-52 | 18 |
mature T cell | 6.67e-52 | 18 |
immature alpha-beta T cell | 6.67e-52 | 18 |
T cell | 6.85e-37 | 25 |
pro-T cell | 6.85e-37 | 25 |
CD4-positive, alpha-beta T cell | 1.05e-33 | 6 |
CD8-positive, alpha-beta T cell | 1.46e-25 | 11 |
lymphoid lineage restricted progenitor cell | 4.34e-20 | 52 |
lymphocyte | 1.13e-19 | 53 |
common lymphoid progenitor | 1.13e-19 | 53 |
naive T cell | 1.29e-11 | 3 |
CD4-positive, alpha-beta thymocyte | 3.00e-09 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 3.00e-09 | 1 |
mature CD4 single-positive thymocyte | 3.00e-09 | 1 |
resting double-positive thymocyte | 3.00e-09 | 1 |
double-positive blast | 3.00e-09 | 1 |
CD69-positive double-positive thymocyte | 3.00e-09 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 3.00e-09 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 3.00e-09 | 1 |
CD24-positive, CD4 single-positive thymocyte | 3.00e-09 | 1 |
nongranular leukocyte | 7.21e-08 | 115 |
leukocyte | 1.35e-07 | 136 |
hematopoietic lineage restricted progenitor cell | 1.85e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 3.75e-18 | 4 |
hemolymphoid system gland | 3.75e-18 | 4 |
thymic region | 3.75e-18 | 4 |
pharyngeal gland | 3.75e-18 | 4 |
thymus primordium | 3.75e-18 | 4 |
pharyngeal epithelium | 2.67e-12 | 6 |
hemopoietic organ | 1.28e-10 | 7 |
immune organ | 1.28e-10 | 7 |
neck | 1.39e-07 | 10 |
gland of gut | 1.39e-07 | 10 |
chordate pharynx | 1.39e-07 | 10 |
pharyngeal region of foregut | 1.39e-07 | 10 |
pharynx | 6.18e-07 | 11 |
entire pharyngeal arch endoderm | 6.18e-07 | 11 |
early pharyngeal endoderm | 6.18e-07 | 11 |