CL:0000790: Difference between revisions

Revision as of 10:21, 12 September 2014

Name:	immature alpha-beta T cell
Namespace:	cell;;efo
Definition:	"An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms:	"immature alpha-beta T lymphocyte" EXACT [] "immature alpha-beta T-cell" EXACT [] "immature alpha-beta T-lymphocyte" EXACT []

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0000789(alpha-beta T cell),CL:0002420(immature T cell)

Children

is a:	CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell)
develops from:	CL:0000791 (mature alpha-beta T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000790 (immature alpha-beta T cell), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
4.82e-125	FFCP PHASE1:Hg19::chr5:35859622..35859626,+	p@chr5:35859622..35859626, +
4.82e-125	FFCP PHASE2:Hg19::chr5:35859622..35859626,+	p@chr5:35859622..35859626, +
2.55e-96	FFCP PHASE2:Hg19::chr15:89179440..89179457,-	p@chr15:89179440..89179457, -
2.55e-96	FFCP PHASE1:Hg19::chr15:89179440..89179457,-	p@chr15:89179440..89179457, -
1.42e-94	FFCP PHASE1:Hg19::chr5:35854487..35854499,-	p@chr5:35854487..35854499, -
1.42e-94	FFCP PHASE2:Hg19::chr5:35854487..35854499,-	p@chr5:35854487..35854499, -
1.09e-92	FFCP PHASE1:Hg19::chr5:35854779..35854826,+	p@chr5:35854779..35854826, +
1.09e-92	FFCP PHASE2:Hg19::chr5:35854779..35854826,+	p@chr5:35854779..35854826, +
4.33e-92	FFCP PHASE2:Hg19::chr4:103551892..103551903,-	p@chr4:103551892..103551903, -
4.33e-92	FFCP PHASE1:Hg19::chr4:103551892..103551903,-	p@chr4:103551892..103551903, -
1.97e-90	FFCP PHASE1:Hg19::chr5:35856882..35856909,-	p@chr5:35856882..35856909, -
1.97e-90	FFCP PHASE2:Hg19::chr5:35856882..35856909,-	p@chr5:35856882..35856909, -
2.93e-90	FFCP PHASE2:Hg19::chr18:68318174..68318193,-	p1@GTSCR1
2.93e-90	FFCP PHASE1:Hg19::chr18:68318174..68318193,-	p1@GTSCR1
5.78e-88	FFCP PHASE1:Hg19::chr7:97880779..97880793,+	p@chr7:97880779..97880793, +
5.78e-88	FFCP PHASE2:Hg19::chr7:97880779..97880793,+	p@chr7:97880779..97880793, +
8.73e-88	FFCP PHASE1:Hg19::chr1:25255894..25255906,+	p@chr1:25255894..25255906, +
8.73e-88	FFCP PHASE2:Hg19::chr1:25255894..25255906,+	p@chr1:25255894..25255906, +
4.59e-87	FFCP PHASE2:Hg19::chr2:38830433..38830444,-	p10@HNRPLL
4.59e-87	FFCP PHASE1:Hg19::chr2:38830433..38830444,-	p10@HNRPLL
1.31e-86	FFCP PHASE1:Mm9::chr14:54831123..54831141,+	p1@ENSMUST00000103733
1.31e-86	FFCP PHASE1:Mm9::chr4:151490126..151490137,+	p3@Tnfrsf25
1.31e-86	FFCP PHASE1:Mm9::chr4:32339511..32339518,+	p@chr4:32339511..32339518, +
1.31e-86	FFCP PHASE2:Mm9::chr14:54150421..54150439,+	p1@uc007tsm.1
1.31e-86	FFCP PHASE2:Mm9::chr6:48637679..48637692,+	p@chr6:48637679..48637692, +
1.31e-86	FFCP PHASE2:Mm9::chr19:10869146..10869168,-	p@chr19:10869146..10869168, -
1.31e-86	FFCP PHASE1:Mm9::chr14:54150421..54150439,+	p1@uc007tsm.1
1.31e-86	FFCP PHASE1:Mm9::chr11:99015330..99015341,-	p@chr11:99015330..99015341, -
1.31e-86	FFCP PHASE1:Mm9::chr19:10869146..10869168,-	p@chr19:10869146..10869168, -
1.31e-86	FFCP PHASE2:Mm9::chr4:32339511..32339518,+	p@chr4:32339511..32339518, +
1.31e-86	FFCP PHASE2:Mm9::chr11:99015330..99015341,-	p@chr11:99015330..99015341, -
1.31e-86	FFCP PHASE2:Mm9::chr14:54831123..54831141,+	p1@ENSMUST00000103733
1.31e-86	FFCP PHASE1:Mm9::chr6:48637679..48637692,+	p@chr6:48637679..48637692, +
1.31e-86	FFCP PHASE2:Mm9::chr4:151490126..151490137,+	p3@Tnfrsf25
2.98e-86	FFCP PHASE2:Hg19::chr10:14611822..14611844,-	p@chr10:14611822..14611844, -
2.98e-86	FFCP PHASE1:Hg19::chr10:14611822..14611844,-	p@chr10:14611822..14611844, -
3.57e-86	FFCP PHASE2:Hg19::chr4:90205082..90205093,+	p@chr4:90205082..90205093, +
3.57e-86	FFCP PHASE1:Hg19::chr4:90205082..90205093,+	p@chr4:90205082..90205093, +
9.89e-85	FFCP PHASE1:Hg19::chr16:57162957..57162973,+	p@chr16:57162957..57162973, +
9.89e-85	FFCP PHASE2:Hg19::chr16:57162957..57162973,+	p@chr16:57162957..57162973, +
1.01e-83	FFCP PHASE1:Hg19::chr2:87053288..87053295,-	p@chr2:87053288..87053295, -
1.01e-83	FFCP PHASE2:Hg19::chr2:87053288..87053295,-	p@chr2:87053288..87053295, -
1.1e-83	FFCP PHASE2:Hg19::chr6:128299606..128299618,+	p@chr6:128299606..128299618, +
1.1e-83	FFCP PHASE2:Hg19::chr11:122709344..122709378,+	p@chr11:122709344..122709378, +
1.1e-83	FFCP PHASE1:Hg19::chr11:122709344..122709378,+	p@chr11:122709344..122709378, +
1.1e-83	FFCP PHASE1:Hg19::chr6:128299606..128299618,+	p@chr6:128299606..128299618, +
1.69e-83	FFCP PHASE1:Hg19::chr5:35780579..35780585,+	p@chr5:35780579..35780585, +
1.69e-83	FFCP PHASE2:Hg19::chr5:35780579..35780585,+	p@chr5:35780579..35780585, +
1.02e-82	FFCP PHASE1:Hg19::chr5:35859218..35859252,-	p@chr5:35859218..35859252, -
1.02e-82	FFCP PHASE2:Hg19::chr5:35859218..35859252,-	p@chr5:35859218..35859252, -
1.33e-82	FFCP PHASE2:Hg19::chr12:49375076..49375089,-	p@chr12:49375076..49375089, -
1.33e-82	FFCP PHASE1:Hg19::chr12:49375076..49375089,-	p@chr12:49375076..49375089, -
3.02e-82	FFCP PHASE2:Hg19::chr10:9060907..9060927,-	p@chr10:9060907..9060927, -
3.02e-82	FFCP PHASE1:Hg19::chr10:9060907..9060927,-	p@chr10:9060907..9060927, -
4.05e-82	FFCP PHASE2:Hg19::chr12:10561626..10561641,-	p@chr12:10561626..10561641, -
4.05e-82	FFCP PHASE1:Hg19::chr12:10561626..10561641,-	p@chr12:10561626..10561641, -
4.31e-82	FFCP PHASE2:Hg19::chr7:150178764..150178778,-	p@chr7:150178764..150178778, -
4.31e-82	FFCP PHASE1:Hg19::chr7:150178764..150178778,-	p@chr7:150178764..150178778, -
5.81e-82	FFCP PHASE2:Hg19::chr2:182038499..182038509,+	p@chr2:182038499..182038509, +
5.81e-82	FFCP PHASE1:Hg19::chr2:182038499..182038509,+	p@chr2:182038499..182038509, +
1.02e-81	FFCP PHASE2:Hg19::chr4:4271366..4271377,-	p@chr4:4271366..4271377, -
1.02e-81	FFCP PHASE1:Hg19::chr4:4271366..4271377,-	p@chr4:4271366..4271377, -
8.22e-81	FFCP PHASE2:Hg19::chr11:108094238..108094253,+	p10@ATM
8.22e-81	FFCP PHASE1:Hg19::chr11:108094238..108094253,+	p10@ATM
2.22e-80	FFCP PHASE2:Hg19::chr12:12867774..12867787,-	p@chr12:12867774..12867787, -
2.22e-80	FFCP PHASE1:Hg19::chr12:12867774..12867787,-	p@chr12:12867774..12867787, -
8.6e-79	FFCP PHASE1:Hg19::chr5:67571114..67571129,-	p@chr5:67571114..67571129, -
8.6e-79	FFCP PHASE2:Hg19::chr5:67571114..67571129,-	p@chr5:67571114..67571129, -
2.3e-78	FFCP PHASE1:Mm9::chr14:54811976..54811990,+	p1@ENSMUST00000103714
2.3e-78	FFCP PHASE2:Mm9::chr14:54811976..54811990,+	p1@ENSMUST00000103714
2.3e-78	FFCP PHASE1:Mm9::chr5:123440486..123440504,-	p@chr5:123440486..123440504, -
2.3e-78	FFCP PHASE2:Mm9::chr12:74704873..74704900,+	p@chr12:74704873..74704900, +
2.3e-78	FFCP PHASE1:Mm9::chr14:56207154..56207165,-	p@chr14:56207154..56207165, -
2.3e-78	FFCP PHASE2:Mm9::chr14:56207154..56207165,-	p@chr14:56207154..56207165, -
2.3e-78	FFCP PHASE2:Mm9::chr5:123440486..123440504,-	p@chr5:123440486..123440504, -
2.3e-78	FFCP PHASE2:Mm9::chr7:31935025..31935037,+	p@chr7:31935025..31935037, +
2.3e-78	FFCP PHASE1:Mm9::chr8:84082784..84082795,+	p@chr8:84082784..84082795, +
2.3e-78	FFCP PHASE1:Mm9::chr7:31935025..31935037,+	p@chr7:31935025..31935037, +
2.3e-78	FFCP PHASE1:Mm9::chr12:74704873..74704900,+	p@chr12:74704873..74704900, +
2.3e-78	FFCP PHASE2:Mm9::chr8:84082784..84082795,+	p@chr8:84082784..84082795, +
2.56e-78	FFCP PHASE1:Hg19::chr6:143228788..143228799,-	p@chr6:143228788..143228799, -
2.56e-78	FFCP PHASE2:Hg19::chr6:143228788..143228799,-	p@chr6:143228788..143228799, -
2.82e-78	FFCP PHASE1:Mm9::chr5:123440767..123440778,+	p@chr5:123440767..123440778, +
2.82e-78	FFCP PHASE1:Mm9::chr4:32422919..32422935,+	p@chr4:32422919..32422935, +
2.82e-78	FFCP PHASE2:Mm9::chr14:54838649..54838660,+	p@chr14:54838649..54838660, +
2.82e-78	FFCP PHASE1:Mm9::chr14:54838649..54838660,+	p@chr14:54838649..54838660, +
2.82e-78	FFCP PHASE2:Mm9::chr4:32422919..32422935,+	p@chr4:32422919..32422935, +
2.82e-78	FFCP PHASE2:Mm9::chr5:123440767..123440778,+	p@chr5:123440767..123440778, +
3.46e-78	FFCP PHASE1:Mm9::chr15:27786221..27786240,-	p@chr15:27786221..27786240, -
3.46e-78	FFCP PHASE2:Mm9::chr15:27786221..27786240,-	p@chr15:27786221..27786240, -
4.25e-78	FFCP PHASE2:Mm9::chr6:99215016..99215036,+	p@chr6:99215016..99215036, +
4.25e-78	FFCP PHASE1:Mm9::chr3:103672068..103672090,-	p@chr3:103672068..103672090, -
4.25e-78	FFCP PHASE1:Mm9::chr6:99215016..99215036,+	p@chr6:99215016..99215036, +
4.25e-78	FFCP PHASE2:Mm9::chr3:103672068..103672090,-	p@chr3:103672068..103672090, -
5.22e-78	FFCP PHASE2:Mm9::chr6:48634453..48634468,-	p@chr6:48634453..48634468, -
5.22e-78	FFCP PHASE1:Mm9::chr6:48634453..48634468,-	p@chr6:48634453..48634468, -
6.45e-78	FFCP PHASE1:Hg19::chr7:36816941..36816949,+	p@chr7:36816941..36816949, +
6.45e-78	FFCP PHASE2:Hg19::chr7:36816941..36816949,+	p@chr7:36816941..36816949, +
7.86e-78	FFCP PHASE1:Mm9::chr15:60018823..60018838,-	p5@uc007vxz.1
7.86e-78	FFCP PHASE2:Mm9::chr15:60018823..60018838,-	p5@uc007vxz.1

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{CL
-|id=CL:0000790
+|alt_id=
-|name=immature alpha-beta T cell
-|namespace=cell;;efo
-|def="An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
-|xref=
-|is_a=CL:0000789;;CL:0002420
-|synonym="immature alpha-beta T lymphocyte" EXACT [];;"immature alpha-beta T-cell" EXACT [];;"immature alpha-beta T-lymphocyte" EXACT []
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
-|subset=
 |derives_from=
 |develops_from=
+|disjoint_from=
 |has_quality=
+|id=CL:0000790
+|is_a=CL:0000789 ;;CL:0002420
+|is_obsolete=
 |located_in=
+|name=immature alpha-beta T cell
+|namespace=cell;;efo
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="immature alpha-beta T lymphocyte" EXACT [];;"immature alpha-beta T-cell" EXACT [];;"immature alpha-beta T-lymphocyte" EXACT []
+|union_of=
+|xref=
 }}

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Revision as of 10:21, 12 September 2014

Ontology Tree: Loaded from BioPortal

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