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{{UBERON
{{UBERON
|id=UBERON:0001557
|alt_id=UBERON:FMA_45661-MA_0000442
|name=upper respiratory tract
|namespace=
|def="Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
|xref=EHDAA2:0002136;;EMAPA:17669;;FMA:45661;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000442;;OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ;;SCTID:361381009;;VHOG:0000406
|is_a=UBERON:0000072
|synonym=
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FMA_45661-MA_0000442
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001557
|is_a=UBERON:0000072
|is_obsolete=
|located_in=
|located_in=
|name=upper respiratory tract
|namespace=
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym=
|union_of=
|xref=EHDAA2:0002136;;EMAPA:17669;;FMA:45661;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000442;;OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ;;SCTID:361381009;;VHOG:0000406
}}
}}

Revision as of 11:04, 12 September 2014

Name:upper respiratory tract
Definition:"Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract]
Xrefs:
links:

EHDAA2:0002136
EMAPA:17669
FMA:45661
[1]
[2]
MA:0000442
OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ
SCTID:361381009

VHOG:0000406
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_45661-MA_0000442
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000072(segment of respiratory tract)



Children

part of:UBERON:0001707 (nasal cavity),UBERON:0004814 (upper respiratory tract epithelium),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015787 (upper respiratory conduit)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001557 (upper respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data