UBERON:0001557: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_45661-MA_0000442 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001557 | |||
|is_a=UBERON:0000072 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=upper respiratory tract | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=EHDAA2:0002136;;EMAPA:17669;;FMA:45661;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000442;;OpenCyc:Mx4rtT2HwgJMEdyAAADggVbxzQ;;SCTID:361381009;;VHOG:0000406 | |||
}} | }} |
Revision as of 11:04, 12 September 2014
Name: | upper respiratory tract | |
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Definition: | "Subdivision of respiratory system which consists of the nose, nasopharynx, oropharynx and larynx[FMA]" [FMA:FMA, Wikipedia:Upper_respiratory_tract] | |
Xrefs: |
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Comments: | This class was created automatically from a combination of ontologies | |
Alt_id: | UBERON:FMA_45661-MA_0000442 | |
Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000072(segment of respiratory tract) |
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Children
part of: | UBERON:0001707 (nasal cavity),UBERON:0004814 (upper respiratory tract epithelium),UBERON:0009145 (pharyngeal region of foregut),UBERON:0015787 (upper respiratory conduit) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10275-104E5
- 10303-104H6
- 10331-105B7
- 11890-125D9 (Hep-2 cells treated with Streptococci strain 5448, biol_rep1)
- 11891-125E1 (Hep-2 cells treated with Streptococci strain 5448, biol_rep2)
- 11892-125E2 (Hep-2 cells treated with Streptococci strain 5448, biol_rep3)
- 11893-125E3
- 11894-125E4 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep1)
- 11895-125E5 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep2)
- 11896-125E6 (Hep-2 cells treated with Streptococci strain JRS4, biol_rep3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001557 (upper respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data