UBERON:0004904: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) | |comment=for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) | ||
|created_by= | |created_by= | ||
| | |def="A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004904 | |||
|is_a=UBERON:0001021 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=nerve connecting eye with brain | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of=UBERON:0002104 | |part_of=UBERON:0002104 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=grouping_class | ||
| | |synonym="optic nerve" BROAD [BTO:0000966];;"optic nerve (generic)" EXACT [] | ||
|union_of= | |||
|xref=BTO:0000966;;EV:0100351;;FBbt:00001956;;TADS:0000232 | |||
}} | }} |
Revision as of 11:32, 12 September 2014
Name: | nerve connecting eye with brain | |
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Definition: | "A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966] | |
Xrefs: |
| |
Synonyms: |
"optic nerve" BROAD [BTO:0000966] "optic nerve (generic)" EXACT [] | |
Comments: | for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) | |
Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0001021(nerve) |
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part_of: | UBERON:0002104(visual system) |
Children
is a: | UBERON:0000941 (cranial nerve II) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10305-104H8
- 10333-105B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004904 (nerve connecting eye with brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data