CL:0002319: Difference between revisions
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|located_in= | |located_in= | ||
|name=neural cell | |name=neural cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-15T01:34:57Z | |obo_creation_date=2010-09-15T01:34:57Z | ||
|part_of=UBERON:0001016 | |part_of=UBERON:0001016 | ||
Latest revision as of 16:41, 12 September 2014
| Name: | neural cell | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell that is part of the nervous system." [GOC:tfm, ISBN:0618947256] | ||
| Xrefs: |
| ||
| Created by: | tmeehan | ||
| Creation date: | 2010-09-15T01:34:57Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell),CL:0002371(somatic cell) |
|---|---|
| part_of: | UBERON:0001016(nervous system) |
Children
| is a: | CL:0000047 (neuronal stem cell),CL:0000095 (neuron associated cell),CL:0000540 (neuron),CL:0000708 (leptomeningeal cell),CL:0000878 (central nervous system macrophage),CL:0002549 (fibroblast of choroid plexus),CL:0002575 (central nervous system pericyte),CL:0002576 (perineural cell),CL:0002590 (smooth muscle cell of the brain vasculature) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10442-106F1 (schwannoma cell line:HS-PSS)
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10559-108A1
- 10669-109D3
- 10670-109D4
... further results Mouse (Mus musculus)
- 10413-106B8 (glioma cell line:GI-1)
- 10425-106D2 (astrocytoma cell line:TM-31)
- 10442-106F1 (schwannoma cell line:HS-PSS)
- 10444-106F3 (glioblastoma cell line:A172)
- 10456-106G6
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10485-107A8 (glioblastoma cell line:T98G)
- 10559-108A1
- 10669-109D3
- 10670-109D4
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002319 (neural cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.05e-60 | FFCP PHASE1:Mm9::chr2:87366179..87366201,+#_0db4610fdaa50467f0e0100f2e6b7700 | p1@ENSMUST00000167296 |
| 2.05e-60 | FFCP PHASE2:Mm9::chr2:87366179..87366201,+#_0db4610fdaa50467f0e0100f2e6b7700 | p1@ENSMUST00000167296 |
| 1.37e-58 | FFCP PHASE1:Mm9::chr7:111031610..111031645,-#_6443b666190f2b1665a2103208e775af | p1@ENSMUST00000120890 |
| 1.37e-58 | FFCP PHASE2:Mm9::chr7:111031610..111031645,-#_6443b666190f2b1665a2103208e775af | p1@ENSMUST00000120890 |
| 1.5e-58 | FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_e4659718186748a6c9588e28b410bb2a | p@chr5:135540733..135540788, - |
| 1.5e-58 | FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_e4659718186748a6c9588e28b410bb2a | p@chr5:135540733..135540788, - |
| 2.74e-55 | FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_d4446d59e9c4e7ce1dcb0a98f1bcd490 | p@chr7:109167666..109167667, + |
| 2.74e-55 | FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_d4446d59e9c4e7ce1dcb0a98f1bcd490 | p@chr7:109167666..109167667, + |
| 1.24e-53 | FFCP PHASE1:Mm9::chr2:30663055..30663094,-#_963306a1b4cd6453d0ae2e1445dbf835 | p@chr2:30663055..30663094, - |
| 1.24e-53 | FFCP PHASE2:Mm9::chr2:30663055..30663094,-#_963306a1b4cd6453d0ae2e1445dbf835 | p@chr2:30663055..30663094, - |
| 6.23e-53 | FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_f45c90f5beefafb34d335b91795a90ea | p@chr8:125944624..125944663, + |
| 6.23e-53 | FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_f45c90f5beefafb34d335b91795a90ea | p@chr8:125944624..125944663, + |
| 4.11e-51 | FFCP PHASE2:Mm9::chr7:38554684..38554696,-#_67436e77896d41193ff4805d4bf2a6c9 | p10@Zfp536 |
| 4.11e-51 | FFCP PHASE1:Mm9::chr7:38554684..38554696,-#_67436e77896d41193ff4805d4bf2a6c9 | p10@Zfp536 |
| 8.93e-49 | FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_f89ca809f521e9c836d64e016b67236f | p@chr13:9279895..9279899, + |
| 8.93e-49 | FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_f89ca809f521e9c836d64e016b67236f | p@chr13:9279895..9279899, + |
| 1.03e-48 | FFCP PHASE1:Mm9::chr9:57389282..57389286,+#_cec1e802da7a25185e46c24e67ebf2da | p@chr9:57389282..57389286, + |
| 1.03e-48 | FFCP PHASE2:Mm9::chr9:57389282..57389286,+#_cec1e802da7a25185e46c24e67ebf2da | p@chr9:57389282..57389286, + |
| 1.34e-46 | FFCP PHASE1:Hg19::chr20:20472232..20472244,-#_08fea83f2417af7cdf4faac694881e9a | p@chr20:20472232..20472244, - |
| 1.34e-46 | FFCP PHASE2:Hg19::chr20:20472232..20472244,-#_08fea83f2417af7cdf4faac694881e9a | p@chr20:20472232..20472244, - |
| 8.95e-45 | FFCP PHASE1:Hg19::chr17:42988599..42988605,-#_93e6cbb7f56aab3d9599a79475293193 | p46@GFAP |
| 8.95e-45 | FFCP PHASE2:Hg19::chr17:42988599..42988605,-#_93e6cbb7f56aab3d9599a79475293193 | p46@GFAP |
| 4.36e-44 | FFCP PHASE2:Mm9::chr15:87454726..87454739,+#_a434c5e753be89e3915a2f77eda4bd42 | p@chr15:87454726..87454739, + |
| 4.36e-44 | FFCP PHASE1:Mm9::chr15:87454726..87454739,+#_a434c5e753be89e3915a2f77eda4bd42 | p@chr15:87454726..87454739, + |
| 4.38e-44 | FFCP PHASE2:Hg19::chr2:104096987..104096993,-#_764a9424577cb4e82ae955612105d95e | p@chr2:104096987..104096993, - |
| 4.38e-44 | FFCP PHASE1:Hg19::chr2:104096987..104096993,-#_764a9424577cb4e82ae955612105d95e | p@chr2:104096987..104096993, - |
| 8.82e-43 | FFCP PHASE1:Mm9::chr6:7933424..7933445,-#_11861c7d9dfd8a555d8b9e8535291ddd | p1@ENSMUST00000057757 |
| 8.82e-43 | FFCP PHASE2:Mm9::chr6:7933424..7933445,-#_11861c7d9dfd8a555d8b9e8535291ddd | p1@ENSMUST00000057757 |
| 1.12e-42 | FFCP PHASE2:Mm9::chr3:8545615..8545628,+#_f33b8f4d6d19f9fc6403fc3eaba6355c | p@chr3:8545615..8545628, + |
| 1.12e-42 | FFCP PHASE1:Mm9::chr3:8545615..8545628,+#_f33b8f4d6d19f9fc6403fc3eaba6355c | p@chr3:8545615..8545628, + |
| 1.26e-42 | FFCP PHASE1:Mm9::chr15:85465272..85465287,+#_2d6427e422afb6590b5fefcf592936a3 | p@chr15:85465272..85465287, + |
| 1.26e-42 | FFCP PHASE2:Mm9::chr15:85465272..85465287,+#_2d6427e422afb6590b5fefcf592936a3 | p@chr15:85465272..85465287, + |
| 2.13e-42 | FFCP PHASE2:Mm9::chr9:108998049..108998061,+#_f1691c21962da169fbfb7e322b3d74f7 | p5@Plxnb1 |
| 2.13e-42 | FFCP PHASE1:Mm9::chr9:108998049..108998061,+#_f1691c21962da169fbfb7e322b3d74f7 | p5@Plxnb1 |
| 2.79e-42 | FFCP PHASE1:Hg19::chr5:5140408..5140419,+#_873e1c67ac40ffcbd3f1d2fff1a34efa | p4@ADAMTS16 |
| 2.79e-42 | FFCP PHASE2:Hg19::chr5:5140408..5140419,+#_873e1c67ac40ffcbd3f1d2fff1a34efa | p4@ADAMTS16 |
| 4.12e-42 | FFCP PHASE1:Hg19::chr11:30605486..30605499,-#_d3b52b4e502f63ea2310c4ed4d4082be | p@chr11:30605486..30605499, - |
| 4.12e-42 | FFCP PHASE2:Hg19::chr11:30605486..30605499,-#_d3b52b4e502f63ea2310c4ed4d4082be | p@chr11:30605486..30605499, - |
| 5.89e-42 | FFCP PHASE1:Mm9::chr13:99383382..99383414,+#_324845806fbb677630dfc14cd4301e0c | p@chr13:99383382..99383414, + |
| 5.89e-42 | FFCP PHASE2:Mm9::chr13:99383382..99383414,+#_324845806fbb677630dfc14cd4301e0c | p@chr13:99383382..99383414, + |
| 1.08e-41 | FFCP PHASE2:Mm9::chr14:52533766..52533777,-#_eb95ae9c4474e5b2653f39f1c255afd2 | p@chr14:52533766..52533777, - |
| 1.08e-41 | FFCP PHASE1:Mm9::chr14:52533766..52533777,-#_eb95ae9c4474e5b2653f39f1c255afd2 | p@chr14:52533766..52533777, - |
| 3.34e-41 | FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_ce5105dbfbeefae34e09e3e73ae3241d | p22@Zmiz1 |
| 3.34e-41 | FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_ce5105dbfbeefae34e09e3e73ae3241d | p22@Zmiz1 |
| 7.99e-41 | FFCP PHASE2:Mm9::chr3:28664288..28664311,-#_aac482724b9464633cda887cb35a4946 | p1@LOC100505213 |
| 7.99e-41 | FFCP PHASE1:Mm9::chr3:28664288..28664311,-#_aac482724b9464633cda887cb35a4946 | p1@LOC100505213 |
| 2.91e-40 | FFCP PHASE2:Hg19::chr5:146939550..146939564,+#_ea58a154b731fc868dd7580e553dc28d | p1@LOC153469 |
| 2.91e-40 | FFCP PHASE1:Hg19::chr5:146939550..146939564,+#_ea58a154b731fc868dd7580e553dc28d | p1@LOC153469 |
| 3.72e-40 | FFCP PHASE1:Mm9::chr5:115940240..115940260,+#_a7c90d78aa5b825cee285aef0fdc6b10 | p1@ENSMUST00000101833 |
| 3.72e-40 | FFCP PHASE2:Mm9::chr5:115940240..115940260,+#_a7c90d78aa5b825cee285aef0fdc6b10 | p1@ENSMUST00000101833 |
| 5.93e-40 | FFCP PHASE1:Mm9::chr17:35137753..35137781,-#_5681600b2dbf34fe958a068be9deecb1 | p2@ENSMUST00000174517 |
| 5.93e-40 | FFCP PHASE2:Mm9::chr17:35137753..35137781,-#_5681600b2dbf34fe958a068be9deecb1 | p2@ENSMUST00000174517 |
| 7.88e-40 | FFCP PHASE1:Mm9::chr12:55340225..55340232,+#_6e234769b4c9817ed05ff5d47fa72654 | p1@ENSMUST00000082671 |
| 7.88e-40 | FFCP PHASE2:Mm9::chr12:55340225..55340232,+#_6e234769b4c9817ed05ff5d47fa72654 | p1@ENSMUST00000082671 |
| 1.37e-39 | FFCP PHASE2:Hg19::chr17:76266195..76266208,-#_2fb75e7e6099d2fc522b045ed22c9cf9 | p@chr17:76266195..76266208, - |
| 1.37e-39 | FFCP PHASE1:Hg19::chr17:76266195..76266208,-#_2fb75e7e6099d2fc522b045ed22c9cf9 | p@chr17:76266195..76266208, - |
| 3.64e-39 | FFCP PHASE1:Mm9::chr6:144996025..144996043,-#_49518cb3a9314eb71d0d2bc46091aa7c | p7@Bcat1 |
| 3.64e-39 | FFCP PHASE2:Mm9::chr6:144996025..144996043,-#_49518cb3a9314eb71d0d2bc46091aa7c | p7@Bcat1 |
| 5.84e-39 | FFCP PHASE1:Mm9::chr12:52941704..52941726,-#_198c53bfc78ae3a92bb91e0a0f4dc622 | p@chr12:52941704..52941726, - |
| 5.84e-39 | FFCP PHASE2:Mm9::chr12:52941704..52941726,-#_198c53bfc78ae3a92bb91e0a0f4dc622 | p@chr12:52941704..52941726, - |
| 7.13e-39 | FFCP PHASE2:Mm9::chr13:9277420..9277424,+#_784b23ca21f649790682bb040242c494 | p@chr13:9277420..9277424, + |
| 7.13e-39 | FFCP PHASE1:Mm9::chr13:9277420..9277424,+#_784b23ca21f649790682bb040242c494 | p@chr13:9277420..9277424, + |
| 2.89e-38 | FFCP PHASE1:Mm9::chr9:75414533..75414538,-#_4471482cd714b3ec1baed1065e4fe1f0 | p@chr9:75414533..75414538, - |
| 2.89e-38 | FFCP PHASE2:Mm9::chr9:75414533..75414538,-#_4471482cd714b3ec1baed1065e4fe1f0 | p@chr9:75414533..75414538, - |
| 5.48e-38 | FFCP PHASE2:Mm9::chr10:57504783..57504796,+#_432c67bc4f41433233a80d6f1b6178d1 | p4@Fabp7 |
| 5.48e-38 | FFCP PHASE1:Mm9::chr10:57504783..57504796,+#_432c67bc4f41433233a80d6f1b6178d1 | p4@Fabp7 |
| 6.91e-38 | FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_783375df5a37d9e601354a49a22af505 | p@chr8:125944694..125944740, + |
| 6.91e-38 | FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_783375df5a37d9e601354a49a22af505 | p@chr8:125944694..125944740, + |
| 6.94e-38 | FFCP PHASE1:Mm9::chrX:98615115..98615126,-#_374898bb851118fb0d9e68d54921b815 | p4@Zmym3 |
| 6.94e-38 | FFCP PHASE2:Mm9::chrX:98615115..98615126,-#_374898bb851118fb0d9e68d54921b815 | p4@Zmym3 |
| 7.21e-38 | FFCP PHASE1:Mm9::chr3:55849731..55849735,-#_d593e572716ba6e3bcefeab4b28bbf09 | p@chr3:55849731..55849735, - |
| 7.21e-38 | FFCP PHASE2:Mm9::chr3:55849731..55849735,-#_d593e572716ba6e3bcefeab4b28bbf09 | p@chr3:55849731..55849735, - |
| 4.92e-37 | FFCP PHASE1:Hg19::chr4:169553987..169553999,+#_f7920b13ff242ad620275be20e08fc99 | p@chr4:169553987..169553999, + |
| 4.92e-37 | FFCP PHASE2:Hg19::chr4:169553987..169553999,+#_f7920b13ff242ad620275be20e08fc99 | p@chr4:169553987..169553999, + |
| 5.28e-37 | FFCP PHASE2:Mm9::chr14:40284476..40284479,-#_75c1e56bcab70d2197ded6825c819162 | p@chr14:40284476..40284479, - |
| 5.28e-37 | FFCP PHASE1:Mm9::chr14:40284476..40284479,-#_75c1e56bcab70d2197ded6825c819162 | p@chr14:40284476..40284479, - |
| 1.07e-36 | FFCP PHASE1:Mm9::chr13:55584144..55584165,-#_a50bd35d6a4527d1bed21be5c8a7d86a | p@chr13:55584144..55584165, - |
| 1.07e-36 | FFCP PHASE2:Mm9::chr13:55584144..55584165,-#_a50bd35d6a4527d1bed21be5c8a7d86a | p@chr13:55584144..55584165, - |
| 1.25e-36 | FFCP PHASE1:Mm9::chr7:25284618..25284623,+#_e7f81171fbc29af008c406861a38fbf5 | p@chr7:25284618..25284623, + |
| 1.25e-36 | FFCP PHASE2:Mm9::chr7:25284618..25284623,+#_e7f81171fbc29af008c406861a38fbf5 | p@chr7:25284618..25284623, + |
| 1.37e-36 | FFCP PHASE2:Mm9::chr18:43504798..43504810,-#_9a8e5267253d239def81e2a6b8e9cd38 | p@chr18:43504798..43504810, - |
| 1.37e-36 | FFCP PHASE1:Mm9::chr18:43504798..43504810,-#_9a8e5267253d239def81e2a6b8e9cd38 | p@chr18:43504798..43504810, - |
| 1.67e-36 | FFCP PHASE2:Mm9::chr1:170361398..170361400,-#_115486f9451c3799d10b3d3e463cd191 | p@chr1:170361398..170361400, - |
| 1.67e-36 | FFCP PHASE1:Mm9::chr1:170361398..170361400,-#_115486f9451c3799d10b3d3e463cd191 | p@chr1:170361398..170361400, - |
| 1.76e-36 | FFCP PHASE2:Mm9::chr9:20550706..20550724,-#_7e396bf44fd3c5e45ff79f40068260ee | p@chr9:20550706..20550724, - |
| 1.76e-36 | FFCP PHASE1:Mm9::chr9:20550706..20550724,-#_7e396bf44fd3c5e45ff79f40068260ee | p@chr9:20550706..20550724, - |
| 2.14e-36 | FFCP PHASE2:Mm9::chr9:22577265..22577292,-#_190e49504cadd6d72531b4cc8cfe46f4 | p@chr9:22577265..22577292, - |
| 2.14e-36 | FFCP PHASE1:Mm9::chr9:22577265..22577292,-#_190e49504cadd6d72531b4cc8cfe46f4 | p@chr9:22577265..22577292, - |
| 2.44e-36 | FFCP PHASE1:Mm9::chr4:130168084..130168097,+#_b5e5c80d341a911194ddcd53bb18cad1 | p@chr4:130168084..130168097, + |
| 2.44e-36 | FFCP PHASE2:Mm9::chr4:130168084..130168097,+#_b5e5c80d341a911194ddcd53bb18cad1 | p@chr4:130168084..130168097, + |
| 2.55e-36 | FFCP PHASE2:Mm9::chr7:80554269..80554280,+#_4774996c604b90973da5802d3c6f13a1 | p@chr7:80554269..80554280, + |
| 2.55e-36 | FFCP PHASE1:Mm9::chr7:80554269..80554280,+#_4774996c604b90973da5802d3c6f13a1 | p@chr7:80554269..80554280, + |
| 6.36e-36 | FFCP PHASE2:Mm9::chr6:118147812..118147826,-#_9356344001d44f45069463450059d65c | p4@Ret |
| 6.36e-36 | FFCP PHASE1:Mm9::chr6:118147812..118147826,-#_9356344001d44f45069463450059d65c | p4@Ret |
| 9.13e-36 | FFCP PHASE2:Mm9::chr6:78861159..78861164,+#_2c5743b4dc13b1d6d3f2b22022edff31 | p1@ENSMUST00000083352 |
| 9.13e-36 | FFCP PHASE1:Mm9::chr6:78861159..78861164,+#_2c5743b4dc13b1d6d3f2b22022edff31 | p1@ENSMUST00000083352 |
| 9.4e-36 | FFCP PHASE1:Mm9::chr4:39206823..39206829,-#_d44a37db67fc11f120ae5e58679273ad | p1@ENSMUST00000083410 |
| 9.4e-36 | FFCP PHASE2:Mm9::chr4:39206823..39206829,-#_d44a37db67fc11f120ae5e58679273ad | p1@ENSMUST00000083410 |
| 1.55e-35 | FFCP PHASE1:Mm9::chr16:73045578..73045594,+#_32fe0400de18b384f323835c0e945788 | p@chr16:73045578..73045594, + |
| 1.55e-35 | FFCP PHASE2:Mm9::chr16:73045578..73045594,+#_32fe0400de18b384f323835c0e945788 | p@chr16:73045578..73045594, + |
