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{{CL
{{CL
|id=CL:0002563
|alt_id=
|name=intestinal epithelial cell
|namespace=cell
|def="An epithelial cell of the intestine." [GOC:tfm]
|xref=
|is_a=CL:0002251
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=tmeehan
|created_by=tmeehan
|obo_creation_date=2011-03-01T05:18:31Z
|def="An epithelial cell of the intestine." [GOC:tfm]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0002563
|is_a=CL:0002251
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=intestinal epithelial cell
|namespace=FANTOM
|obo_creation_date=2011-03-01T05:18:31Z
|part_of=UBERON:0000160;;UBERON:0001277
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=
}}
}}

Latest revision as of 16:44, 12 September 2014

Name:intestinal epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell of the intestine." [GOC:tfm]
Created by:tmeehan
Creation date:2011-03-01T05:18:31Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0002251(epithelial cell of alimentary canal)
part_of:UBERON:0000160(intestine),UBERON:0001277(intestinal epithelium)



Children


is a:CL:0000510 (paneth cell),CL:0000584 (enterocyte),CL:0002250 (intestinal crypt stem cell),CL:0002253 (epithelial cell of large intestine),CL:0002254 (epithelial cell of small intestine),FF:10812-111B2 (normal intestinal epithelial cell line:FHs 74 Int)
derives from:FF:0000080 (human intestinal epithelial cell sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002563 (intestinal epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data