Personal tools

UBERON:0000163: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=embryonic cloaca
|name=embryonic cloaca
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001008;;UBERON:0012361
|part_of=UBERON:0000922;;UBERON:0001008;;UBERON:0012361

Latest revision as of 17:07, 12 September 2014

Name:embryonic cloaca
Namespace:FANTOM
Definition:"Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
Xrefs:
links:

EHDAA2:0000256
EHDAA:4895
EMAPA:27573

EMAPA:27638
Synonyms: "cloaca" RELATED SENSU []
Comments:compare UBERON:0000162 cloaca

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000162(cloaca),UBERON:0002050(embryonic structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0003064(intermediate mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0001008(renal system),UBERON:0012361(internal anal region)



Children

part of:UBERON:0000164 (primitive urogenital sinus),UBERON:0009846 (embryonic cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000163 (embryonic cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data