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{{UBERON
{{UBERON
|id=UBERON:0000163
|alt_id=
|name=embryonic cloaca
|namespace=
|def="Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
|xref=EHDAA:4895;;EHDAA2:0000256;;EMAPA:27573;;EMAPA:27638
|is_a=UBERON:0000162;;UBERON:0002050
|synonym="cloaca" RELATED SENSU []
|comment=compare UBERON:0000162 cloaca
|comment=compare UBERON:0000162 cloaca
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0003064
|develops_from=UBERON:0003064
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000163
|is_a=UBERON:0000162 ;;UBERON:0002050 ;;UBERON:0006554
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001353
|name=embryonic cloaca
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000922;;UBERON:0001008;;UBERON:0012361
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="cloaca" RELATED SENSU []
|union_of=
|xref=EHDAA2:0000256;;EHDAA:4895;;EMAPA:27573;;EMAPA:27638
}}
}}

Latest revision as of 17:07, 12 September 2014

Name:embryonic cloaca
Namespace:FANTOM
Definition:"Structure in the development of the urinary and reproductive organs[WP]. endoderm-lined chamber into which the hidgut and allantois empty in early embryos[MP]." [MP:0010115, Wikipedia:Cloaca_(embryology)]
Xrefs:
links:

EHDAA2:0000256
EHDAA:4895
EMAPA:27573

EMAPA:27638
Synonyms: "cloaca" RELATED SENSU []
Comments:compare UBERON:0000162 cloaca

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000162(cloaca),UBERON:0002050(embryonic structure),UBERON:0006554(urinary system structure)
develops_from:UBERON:0003064(intermediate mesoderm)
part_of:UBERON:0000922(embryo),UBERON:0001008(renal system),UBERON:0012361(internal anal region)



Children

part of:UBERON:0000164 (primitive urogenital sinus),UBERON:0009846 (embryonic cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000163 (embryonic cloaca), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data