Personal tools

UBERON:0000305: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0000305
|alt_id=UBERON:BTO_0000065-FMA_80223
|name=amnion
|namespace=
|def="A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 遯ｶ蟒｣mniota遯ｶ�; but not in amphibians and fish (Ichthyopsida), which are consequently termed 遯ｶ蟒｣namniota遯ｶ�. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
|xref=BTO:0000065;;EHDAA2:0000116;;EHDAA:136;;EMAPA:16109;;EV:0100122;;FMA:80223;;GAID:1298;;http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png;;MESH:A.16.254.403.277;;ncithesaurus:Amnion;;SCTID:181457005;;VHOG:0000721
|is_a=UBERON:0004120;;UBERON:0004121;;UBERON:0005631
|synonym=
|comment=
|comment=
|alt_id=UBERON:BTO_0000065-FMA_80223
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 遯ｶ蟒｣mniota遯ｶ�; but not in amphibians and fish (Ichthyopsida), which are consequently termed 遯ｶ蟒｣namniota遯ｶ�. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0000924;;UBERON:0004871
|develops_from=UBERON:0005971
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000305
|is_a=UBERON:0004120 ;;UBERON:0005631
|is_obsolete=
|located_in=
|located_in=
|name=amnion
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym=
|union_of=
|xref=BTO:0000065;;EHDAA2:0000116;;EHDAA:136;;EMAPA:16109;;EV:0100122;;FMA:80223;;GAID:1298;;http://upload.wikimedia.org/wikipedia/commons/e/e7/Gray14.png;;MESH:A.16.254.403.277;;ncithesaurus:Amnion;;SCTID:181457005;;VHOG:0000721
}}
}}

Latest revision as of 17:08, 12 September 2014

Name:amnion
Namespace:FANTOM
Definition:"A membrane building the amniotic sac that surrounds and protects an embryo. It is developed in reptiles, birds, and mammals, which are hence called 遯ｶ蟒｣mniota遯ｶ�; but not in amphibians and fish (Ichthyopsida), which are consequently termed 遯ｶ蟒｣namniota遯ｶ�. The primary function of this is the protection of the embryo for its development. It stems from parts of the mesoderm on the outer side and the ectoderm on the inner side[WP]." [Wikipedia:Amnion]
Xrefs:
links:

BTO:0000065
EHDAA2:0000116
EHDAA:136
EMAPA:16109
EV:0100122
FMA:80223
GAID:1298
[ Gray14.png Gray14.png]
MESH:A.16.254.403.277
ncithesaurus:Amnion
SCTID:181457005

VHOG:0000721
Alt_id: UBERON:BTO_0000065-FMA_80223

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004120(mesoderm-derived structure),UBERON:0005631(extraembryonic membrane)
develops_from:UBERON:0005971(amniotic fold)



Children

derives from:FF:0000010 (human amniotic membrane cell- Amnion sample),FF:0011386 (mouse amnion - adult pregnant day17.5 sample)
part of:FF:0000010 (human amniotic membrane cell- Amnion sample),CL:0002536 (amniotic epithelial cell),CL:0002537 (amnion mesenchymal stem cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000305 (amnion), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr9:14480492..14480498,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480492..14480498, -
3.07e-86FFCP PHASE2:Mm9::chr12:61822745..61822749,+#_ea24fa935f6b043451af56f5445061bap@chr12:61822745..61822749, +
3.07e-86FFCP PHASE2:Mm9::chr1:144508809..144508810,+#_ea24fa935f6b043451af56f5445061bap@chr1:144508809..144508810, +
3.07e-86FFCP PHASE1:Mm9::chr13:41014050..41014058,+#_ea24fa935f6b043451af56f5445061bap@chr13:41014050..41014058, +
3.07e-86FFCP PHASE2:Mm9::chr1:156969548..156969555,+#_ea24fa935f6b043451af56f5445061bap@chr1:156969548..156969555, +
3.07e-86FFCP PHASE2:Mm9::chr19:44408344..44408356,+#_ea24fa935f6b043451af56f5445061bap@chr19:44408344..44408356, +
3.07e-86FFCP PHASE2:Mm9::chr5:7972470..7972501,+#_ea24fa935f6b043451af56f5445061bap@chr5:7972470..7972501, +
3.07e-86FFCP PHASE2:Mm9::chr14:117347211..117347216,-#_ea24fa935f6b043451af56f5445061bap@chr14:117347211..117347216, -
3.07e-86FFCP PHASE1:Mm9::chr7:53922673..53922686,-#_ea24fa935f6b043451af56f5445061bap6@Tph1
3.07e-86FFCP PHASE2:Mm9::chr1:155253611..155253631,+#_ea24fa935f6b043451af56f5445061bap@chr1:155253611..155253631, +
3.07e-86FFCP PHASE1:Mm9::chr15:3587448..3587458,+#_ea24fa935f6b043451af56f5445061bap@chr15:3587448..3587458, +
3.07e-86FFCP PHASE1:Mm9::chr1:155253650..155253673,-#_ea24fa935f6b043451af56f5445061bap@chr1:155253650..155253673, -
3.07e-86FFCP PHASE2:Mm9::chr5:123402694..123402698,-#_ea24fa935f6b043451af56f5445061bap34@Kdm2b
3.07e-86FFCP PHASE1:Mm9::chr7:151937929..151937932,-#_ea24fa935f6b043451af56f5445061bap8@Ano1
3.07e-86FFCP PHASE2:Mm9::chr11:8479207..8479215,-#_ea24fa935f6b043451af56f5445061bap21@Tns3
3.07e-86FFCP PHASE1:Mm9::chr16:23320910..23320916,+#_ea24fa935f6b043451af56f5445061bap@chr16:23320910..23320916, +
3.07e-86FFCP PHASE1:Mm9::chr6:128229148..128229155,-#_ea24fa935f6b043451af56f5445061bap@chr6:128229148..128229155, -
3.07e-86FFCP PHASE1:Mm9::chr13:13955172..13955179,-#_ea24fa935f6b043451af56f5445061bap@chr13:13955172..13955179, -
3.07e-86FFCP PHASE1:Mm9::chr2:145704563..145704575,+#_ea24fa935f6b043451af56f5445061bap@chr2:145704563..145704575, +
3.07e-86FFCP PHASE2:Mm9::chr2:145704607..145704614,+#_ea24fa935f6b043451af56f5445061bap@chr2:145704607..145704614, +
3.07e-86FFCP PHASE2:Mm9::chr15:66960457..66960458,-#_ea24fa935f6b043451af56f5445061bap@chr15:66960457..66960458, -
3.07e-86FFCP PHASE2:Mm9::chr7:106840133..106840144,-#_ea24fa935f6b043451af56f5445061bap@chr7:106840133..106840144, -
3.07e-86FFCP PHASE1:Mm9::chr3:6785485..6785487,-#_ea24fa935f6b043451af56f5445061bap@chr3:6785485..6785487, -
3.07e-86FFCP PHASE2:Mm9::chr13:13955172..13955179,-#_ea24fa935f6b043451af56f5445061bap@chr13:13955172..13955179, -
3.07e-86FFCP PHASE1:Mm9::chr14:117347211..117347216,-#_ea24fa935f6b043451af56f5445061bap@chr14:117347211..117347216, -
3.07e-86FFCP PHASE1:Mm9::chr9:14480461..14480472,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480461..14480472, -
3.07e-86FFCP PHASE1:Mm9::chr9:46018679..46018690,+#_ea24fa935f6b043451af56f5445061bap@chr9:46018679..46018690, +
3.07e-86FFCP PHASE1:Mm9::chr13:34338500..34338511,-#_ea24fa935f6b043451af56f5445061bap@chr13:34338500..34338511, -
3.07e-86FFCP PHASE1:Mm9::chr4:154591314..154591321,-#_ea24fa935f6b043451af56f5445061bap@chr4:154591314..154591321, -
3.07e-86FFCP PHASE1:Mm9::chr6:31569960..31569984,+#_ea24fa935f6b043451af56f5445061bap@chr6:31569960..31569984, +
3.07e-86FFCP PHASE1:Mm9::chr9:57862279..57862314,+#_ea24fa935f6b043451af56f5445061bap@chr9:57862279..57862314, +
3.07e-86FFCP PHASE2:Mm9::chr4:12074919..12074933,-#_ea24fa935f6b043451af56f5445061bap@chr4:12074919..12074933, -
3.07e-86FFCP PHASE2:Mm9::chr4:57133028..57133046,-#_ea24fa935f6b043451af56f5445061bap15@Epb4.1l4b
3.07e-86FFCP PHASE1:Mm9::chr15:75882346..75882372,-#_ea24fa935f6b043451af56f5445061bap@chr15:75882346..75882372, -
3.07e-86FFCP PHASE2:Mm9::chr8:119866570..119866573,+#_ea24fa935f6b043451af56f5445061bap@chr8:119866570..119866573, +
3.07e-86FFCP PHASE2:Mm9::chr10:85794371..85794374,+#_ea24fa935f6b043451af56f5445061bap@chr10:85794371..85794374, +
3.07e-86FFCP PHASE1:Mm9::chr6:49322345..49322382,+#_ea24fa935f6b043451af56f5445061bap@chr6:49322345..49322382, +
3.07e-86FFCP PHASE2:Mm9::chr15:78342886..78342906,-#_ea24fa935f6b043451af56f5445061bap@chr15:78342886..78342906, -
3.07e-86FFCP PHASE2:Mm9::chr6:116597799..116597823,-#_ea24fa935f6b043451af56f5445061bap@chr6:116597799..116597823, -
3.07e-86FFCP PHASE1:Mm9::chr6:116597883..116597886,-#_ea24fa935f6b043451af56f5445061bap@chr6:116597883..116597886, -
3.07e-86FFCP PHASE2:Mm9::chr3:52540380..52540384,+#_ea24fa935f6b043451af56f5445061bap@chr3:52540380..52540384, +
3.07e-86FFCP PHASE1:Mm9::chr3:52540380..52540384,+#_ea24fa935f6b043451af56f5445061bap@chr3:52540380..52540384, +
3.07e-86FFCP PHASE1:Mm9::chr11:94369661..94369663,-#_ea24fa935f6b043451af56f5445061bap@chr11:94369661..94369663, -
3.07e-86FFCP PHASE1:Mm9::chr4:12074919..12074933,-#_ea24fa935f6b043451af56f5445061bap@chr4:12074919..12074933, -
3.07e-86FFCP PHASE2:Mm9::chr1:140478890..140478902,-#_ea24fa935f6b043451af56f5445061bap@chr1:140478890..140478902, -
3.07e-86FFCP PHASE1:Mm9::chr10:83099058..83099067,-#_ea24fa935f6b043451af56f5445061bap@chr10:83099058..83099067, -
3.07e-86FFCP PHASE2:Mm9::chr9:57862279..57862314,+#_ea24fa935f6b043451af56f5445061bap@chr9:57862279..57862314, +
3.07e-86FFCP PHASE2:Mm9::chr15:3587418..3587428,+#_ea24fa935f6b043451af56f5445061bap@chr15:3587418..3587428, +
3.07e-86FFCP PHASE1:Mm9::chr7:106840133..106840144,-#_ea24fa935f6b043451af56f5445061bap@chr7:106840133..106840144, -
3.07e-86FFCP PHASE2:Mm9::chr1:155253650..155253673,-#_ea24fa935f6b043451af56f5445061bap@chr1:155253650..155253673, -
3.07e-86FFCP PHASE1:Mm9::chr15:4592969..4592972,-#_ea24fa935f6b043451af56f5445061bap@chr15:4592969..4592972, -
3.07e-86FFCP PHASE1:Mm9::chr1:71760726..71760736,+#_ea24fa935f6b043451af56f5445061bap@chr1:71760726..71760736, +
3.07e-86FFCP PHASE2:Mm9::chr2:132106890..132106933,+#_ea24fa935f6b043451af56f5445061bap@chr2:132106890..132106933, +
3.07e-86FFCP PHASE1:Mm9::chr2:145704607..145704614,+#_ea24fa935f6b043451af56f5445061bap@chr2:145704607..145704614, +
3.07e-86FFCP PHASE2:Mm9::chr19:4603074..4603079,+#_ea24fa935f6b043451af56f5445061bap@chr19:4603074..4603079, +
3.07e-86FFCP PHASE2:Mm9::chr3:31883134..31883152,+#_ea24fa935f6b043451af56f5445061bap@chr3:31883134..31883152, +
3.07e-86FFCP PHASE1:Mm9::chr9:14480480..14480485,-#_ea24fa935f6b043451af56f5445061bap@chr9:14480480..14480485, -
3.07e-86FFCP PHASE1:Mm9::chr9:46018791..46018808,+#_ea24fa935f6b043451af56f5445061bap@chr9:46018791..46018808, +
3.07e-86FFCP PHASE1:Mm9::chr19:44408344..44408356,+#_ea24fa935f6b043451af56f5445061bap@chr19:44408344..44408356, +
3.07e-86FFCP PHASE1:Mm9::chr11:54720278..54720283,+#_ea24fa935f6b043451af56f5445061bap@chr11:54720278..54720283, +
3.07e-86FFCP PHASE1:Mm9::chrX:96225919..96225928,-#_ea24fa935f6b043451af56f5445061bap@chrX:96225919..96225928, -
3.07e-86FFCP PHASE1:Mm9::chr3:31883134..31883152,+#_ea24fa935f6b043451af56f5445061bap@chr3:31883134..31883152, +
3.07e-86FFCP PHASE1:Mm9::chr15:66960457..66960458,-#_ea24fa935f6b043451af56f5445061bap@chr15:66960457..66960458, -
3.07e-86FFCP PHASE2:Mm9::chr11:54720329..54720337,+#_ea24fa935f6b043451af56f5445061bap@chr11:54720329..54720337, +
3.07e-86FFCP PHASE2:Mm9::chr2:52811703..52811738,+#_ea24fa935f6b043451af56f5445061bap@chr2:52811703..52811738, +
3.07e-86FFCP PHASE1:Mm9::chr4:118547872..118547876,+#_ea24fa935f6b043451af56f5445061bap@chr4:118547872..118547876, +
3.07e-86FFCP PHASE2:Mm9::chrX:158457392..158457402,-#_ea24fa935f6b043451af56f5445061bap@chrX:158457392..158457402, -
3.07e-86FFCP PHASE1:Mm9::chr12:61822745..61822749,+#_ea24fa935f6b043451af56f5445061bap@chr12:61822745..61822749, +
3.07e-86FFCP PHASE1:Mm9::chr11:11953937..11953941,+#_ea24fa935f6b043451af56f5445061bap@chr11:11953937..11953941, +
3.07e-86FFCP PHASE1:Mm9::chr1:144508809..144508810,+#_ea24fa935f6b043451af56f5445061bap@chr1:144508809..144508810, +
3.07e-86FFCP PHASE1:Mm9::chr11:78250793..78250794,-#_ea24fa935f6b043451af56f5445061bap@chr11:78250793..78250794, -
3.07e-86FFCP PHASE2:Mm9::chr6:128229148..128229155,-#_ea24fa935f6b043451af56f5445061bap@chr6:128229148..128229155, -
3.07e-86FFCP PHASE1:Mm9::chr2:132106890..132106933,+#_ea24fa935f6b043451af56f5445061bap@chr2:132106890..132106933, +
3.07e-86FFCP PHASE2:Mm9::chr1:74197226..74197270,-#_ea24fa935f6b043451af56f5445061bap@chr1:74197226..74197270, -
3.07e-86FFCP PHASE2:Mm9::chr4:154591314..154591321,-#_ea24fa935f6b043451af56f5445061bap@chr4:154591314..154591321, -
3.07e-86FFCP PHASE2:Mm9::chrX:96225919..96225928,-#_ea24fa935f6b043451af56f5445061bap@chrX:96225919..96225928, -
3.07e-86FFCP PHASE2:Mm9::chr18:63854526..63854533,-#_ea24fa935f6b043451af56f5445061bap@chr18:63854526..63854533, -
3.07e-86FFCP PHASE1:Mm9::chr8:109945451..109945458,-#_ea24fa935f6b043451af56f5445061bap2@Nob1
3.07e-86FFCP PHASE2:Mm9::chr10:85794397..85794405,+#_ea24fa935f6b043451af56f5445061bap@chr10:85794397..85794405, +
3.07e-86FFCP PHASE2:Mm9::chr7:53922673..53922686,-#_ea24fa935f6b043451af56f5445061bap6@Tph1
3.07e-86FFCP PHASE2:Mm9::chr15:4592969..4592972,-#_ea24fa935f6b043451af56f5445061bap@chr15:4592969..4592972, -
3.07e-86FFCP PHASE2:Mm9::chr13:31491605..31491614,-#_ea24fa935f6b043451af56f5445061bap@chr13:31491605..31491614, -
3.07e-86FFCP PHASE2:Mm9::chr1:140478947..140478956,-#_ea24fa935f6b043451af56f5445061bap@chr1:140478947..140478956, -
3.07e-86FFCP PHASE2:Mm9::chr16:23320910..23320916,+#_ea24fa935f6b043451af56f5445061bap@chr16:23320910..23320916, +
3.07e-86FFCP PHASE1:Mm9::chr17:88082166..88082167,-#_ea24fa935f6b043451af56f5445061bap@chr17:88082166..88082167, -
3.07e-86FFCP PHASE1:Mm9::chr11:8479207..8479215,-#_ea24fa935f6b043451af56f5445061bap21@Tns3
3.07e-86FFCP PHASE1:Mm9::chr1:71760739..71760747,+#_ea24fa935f6b043451af56f5445061bap@chr1:71760739..71760747, +
3.07e-86FFCP PHASE2:Mm9::chr11:109215013..109215035,+#_ea24fa935f6b043451af56f5445061bap@chr11:109215013..109215035, +
3.07e-86FFCP PHASE2:Mm9::chr1:71760726..71760736,+#_ea24fa935f6b043451af56f5445061bap@chr1:71760726..71760736, +
3.07e-86FFCP PHASE1:Mm9::chr1:140478890..140478902,-#_ea24fa935f6b043451af56f5445061bap@chr1:140478890..140478902, -
3.07e-86FFCP PHASE2:Mm9::chr19:30189733..30189737,-#_ea24fa935f6b043451af56f5445061bap@chr19:30189733..30189737, -
3.07e-86FFCP PHASE1:Mm9::chr11:7060053..7060066,+#_ea24fa935f6b043451af56f5445061bap@chr11:7060053..7060066, +
3.07e-86FFCP PHASE1:Mm9::chr3:94484780..94484795,-#_ea24fa935f6b043451af56f5445061bap@chr3:94484780..94484795, -
3.07e-86FFCP PHASE1:Mm9::chr2:151366511..151366518,+#_ea24fa935f6b043451af56f5445061bap@chr2:151366511..151366518, +
3.07e-86FFCP PHASE2:Mm9::chr17:25134796..25134826,-#_ea24fa935f6b043451af56f5445061bap@chr17:25134796..25134826, -
3.07e-86FFCP PHASE2:Mm9::chr9:51912341..51912365,+#_ea24fa935f6b043451af56f5445061bap@chr9:51912341..51912365, +
3.07e-86FFCP PHASE1:Mm9::chr9:51912341..51912365,+#_ea24fa935f6b043451af56f5445061bap@chr9:51912341..51912365, +
3.07e-86FFCP PHASE1:Mm9::chr1:75130147..75130152,-#_ea24fa935f6b043451af56f5445061bap@chr1:75130147..75130152, -
3.07e-86FFCP PHASE1:Mm9::chrX:12833809..12833838,+#_ea24fa935f6b043451af56f5445061bap@chrX:12833809..12833838, +
3.07e-86FFCP PHASE1:Mm9::chr4:57133028..57133046,-#_ea24fa935f6b043451af56f5445061bap15@Epb4.1l4b

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0000305&oldid=3277093"