UBERON:0000358: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000358
|name=blastocyst
|namespace=
|def="The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the tr...") |
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:BTO_0001099-FMA_83041 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0000085 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000358 | |||
|is_a=UBERON:0002050 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=blastocyst | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000307 | |part_of=UBERON:0000307 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset= | |||
|synonym="blastocystis" RELATED LATIN [Wikipedia:Blastocyst];;"blastula" RELATED [FMA:83041] | |||
|union_of= | |||
|xref=BTO:0001099;;EFO:0000295;;EV:0100394;;FMA:83041;;GAID:1153;;http://upload.wikimedia.org/wikipedia/commons/7/72/Blastocyst_English.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/7/72/Blastocyst_English.svg/200px-Blastocyst_English.svg.png;;MESH:A.16.254.085;;ncithesaurus:Blastocyst;;OGEM:000006;;SCTID:308837009 | |||
}} | }} | ||
Latest revision as of 17:08, 12 September 2014
| Name: | blastocyst | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The mammalian blastocyst is a hollow ball of cells containing two cell types, the inner cell mass and the trophectoderm[GO]." [GO:0001824, Wikipedia:Blastocyst] | ||
| Xrefs: |
| ||
| Synonyms: |
"blastocystis" RELATED LATIN [Wikipedia:Blastocyst] "blastula" RELATED [FMA:83041] | ||
| Alt_id: | UBERON:BTO_0001099-FMA_83041 |
200px-Blastocyst_English.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002050(embryonic structure) |
|---|---|
| develops_from: | UBERON:0000085(morula) |
| part_of: | UBERON:0000307(blastula) |
Children
| develops from: | UBERON:0000087 (inner cell mass) |
|---|---|
| part of: | UBERON:0000088 (trophoblast),CL:0000351 (trophoblast cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 11534-120A4
- 11614-122A3
- 11695-123A3
- 13283-142F7 (trophoblast stem cell line R1AB differentiation)
- 13284-142F8 (trophoblast stem cell line R1AB differentiation)
- 13285-142F9 (trophoblast stem cell line R1AB differentiation)
- 13286-142G1 (trophoblast stem cell line R1AB differentiation)
- 13287-142G2 (trophoblast stem cell line R1AB differentiation)
- 13288-142G3 (trophoblast stem cell line R1AB differentiation)
- 13289-142G4 (trophoblast stem cell line R1AB differentiation)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000358 (blastocyst), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:114472387..114472401,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr9:114472387..114472401, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:10444938..10444948,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr2:10444938..10444948, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55556656..55556665,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr14:55556656..55556665, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:66852878..66852880,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr16:66852878..66852880, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:122774653..122774665,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr6:122774653..122774665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:66852878..66852880,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr16:66852878..66852880, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:114739327..114739352,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr11:114739327..114739352, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:109236868..109236869,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr13:109236868..109236869, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:66833174..66833180,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr17:66833174..66833180, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:44262965..44262975,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr16:44262965..44262975, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:174143295..174143309,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr1:174143295..174143309, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:44265871..44265878,+#_a6617988b5b14c67940338d6c4ae71cc | p2@Triml2 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:114472387..114472401,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr9:114472387..114472401, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:51025125..51025133,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr3:51025125..51025133, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557268..55557274,+#_a6617988b5b14c67940338d6c4ae71cc | p14@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55556656..55556665,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr14:55556656..55556665, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr19:53750863..53750906,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr19:53750863..53750906, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557459..55557474,+#_a6617988b5b14c67940338d6c4ae71cc | p6@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr7:92689753..92689757,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr7:92689753..92689757, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:68409910..68409914,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr13:68409910..68409914, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:122510273..122510281,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr9:122510273..122510281, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:133574662..133574669,-#_a6617988b5b14c67940338d6c4ae71cc | p2@Lin28a |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:78698925..78698930,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr11:78698925..78698930, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:28338006..28338016,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr8:28338006..28338016, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557307..55557316,+#_a6617988b5b14c67940338d6c4ae71cc | p11@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557268..55557274,+#_a6617988b5b14c67940338d6c4ae71cc | p14@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:122774653..122774665,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr6:122774653..122774665, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:44262965..44262975,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr16:44262965..44262975, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:87810964..87810976,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr12:87810964..87810976, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:68409910..68409914,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr13:68409910..68409914, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:135868692..135868701,+#_a6617988b5b14c67940338d6c4ae71cc | p@chrX:135868692..135868701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:9880126..9880128,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr4:9880126..9880128, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:44392310..44392319,-#_a6617988b5b14c67940338d6c4ae71cc | p4@Zfp42 |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:132804797..132804808,+#_a6617988b5b14c67940338d6c4ae71cc | p4@Ngfrap1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:6988793..6988807,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr17:6988793..6988807, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr7:92689753..92689757,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr7:92689753..92689757, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557459..55557474,+#_a6617988b5b14c67940338d6c4ae71cc | p6@Cmtm5 |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:35180221..35180224,+#_a6617988b5b14c67940338d6c4ae71cc | p1@Rhox6 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:122510273..122510281,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr9:122510273..122510281, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:109236868..109236869,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr13:109236868..109236869, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:78698925..78698930,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr11:78698925..78698930, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr8:28338006..28338016,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr8:28338006..28338016, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:12861081..12861085,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr6:12861081..12861085, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:135868692..135868701,+#_a6617988b5b14c67940338d6c4ae71cc | p@chrX:135868692..135868701, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr14:55557319..55557330,+#_a6617988b5b14c67940338d6c4ae71cc | p7@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557307..55557316,+#_a6617988b5b14c67940338d6c4ae71cc | p11@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:66833174..66833180,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr17:66833174..66833180, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:10444938..10444948,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr2:10444938..10444948, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:135868788..135868795,+#_a6617988b5b14c67940338d6c4ae71cc | p@chrX:135868788..135868795, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:114739327..114739352,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr11:114739327..114739352, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:22692718..22692721,+#_a6617988b5b14c67940338d6c4ae71cc | p@chrX:22692718..22692721, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:44265871..44265878,+#_a6617988b5b14c67940338d6c4ae71cc | p2@Triml2 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:59378043..59378047,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr9:59378043..59378047, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:12861081..12861085,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr6:12861081..12861085, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:51025125..51025133,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr3:51025125..51025133, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:9880126..9880128,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr4:9880126..9880128, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:35180221..35180224,+#_a6617988b5b14c67940338d6c4ae71cc | p1@Rhox6 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:59378043..59378047,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr9:59378043..59378047, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr8:44392310..44392319,-#_a6617988b5b14c67940338d6c4ae71cc | p4@Zfp42 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:174143295..174143309,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr1:174143295..174143309, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:132804797..132804808,+#_a6617988b5b14c67940338d6c4ae71cc | p4@Ngfrap1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr19:53750863..53750906,+#_a6617988b5b14c67940338d6c4ae71cc | p@chr19:53750863..53750906, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chrX:135868788..135868795,+#_a6617988b5b14c67940338d6c4ae71cc | p@chrX:135868788..135868795, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr14:55557319..55557330,+#_a6617988b5b14c67940338d6c4ae71cc | p7@Cmtm5 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:6988793..6988807,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr17:6988793..6988807, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:133574662..133574669,-#_a6617988b5b14c67940338d6c4ae71cc | p2@Lin28a |
| 1.58e-86 | FFCP PHASE1:Mm9::chrX:22692718..22692721,+#_a6617988b5b14c67940338d6c4ae71cc | p@chrX:22692718..22692721, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:87810964..87810976,-#_a6617988b5b14c67940338d6c4ae71cc | p@chr12:87810964..87810976, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr7:135931480..135931486,+#_d850aadccfe6042ebfe125b2fced6b18 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE2:Hg19::chr10:120921270..120921282,-#_d850aadccfe6042ebfe125b2fced6b18 | p@chr10:120921270..120921282, - |
| 5.79e-79 | FFCP PHASE2:Hg19::chr7:135931480..135931486,+#_d850aadccfe6042ebfe125b2fced6b18 | p@chr7:135931480..135931486, + |
| 5.79e-79 | FFCP PHASE1:Hg19::chr10:120921270..120921282,-#_d850aadccfe6042ebfe125b2fced6b18 | p@chr10:120921270..120921282, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr9:114472360..114472371,-#_dcf0b74b58ec955f2133f37552864ac5 | p@chr9:114472360..114472371, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr9:118387933..118387942,+#_dcf0b74b58ec955f2133f37552864ac5 | p4@Eomes |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:155572913..155572925,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr2:155572913..155572925, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:44392345..44392363,-#_dcf0b74b58ec955f2133f37552864ac5 | p1@Zfp42 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr9:118387933..118387942,+#_dcf0b74b58ec955f2133f37552864ac5 | p4@Eomes |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:55557416..55557422,+#_dcf0b74b58ec955f2133f37552864ac5 | p13@Cmtm5 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr13:120218522..120218537,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr13:120218522..120218537, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr5:66542571..66542582,-#_dcf0b74b58ec955f2133f37552864ac5 | p13@Rbm47 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:155572913..155572925,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr2:155572913..155572925, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr5:30062362..30062371,+#_dcf0b74b58ec955f2133f37552864ac5 | p6@Dnajb6 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr16:53576572..53576579,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr16:53576572..53576579, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:44392404..44392412,-#_dcf0b74b58ec955f2133f37552864ac5 | p3@Zfp42 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:109128151..109128162,+#_dcf0b74b58ec955f2133f37552864ac5 | p5@Cdh1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:172371713..172371724,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr2:172371713..172371724, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr13:120218522..120218537,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr13:120218522..120218537, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr5:30062362..30062371,+#_dcf0b74b58ec955f2133f37552864ac5 | p6@Dnajb6 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr1:174143273..174143293,-#_dcf0b74b58ec955f2133f37552864ac5 | p@chr1:174143273..174143293, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr5:66542571..66542582,-#_dcf0b74b58ec955f2133f37552864ac5 | p13@Rbm47 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:44392345..44392363,-#_dcf0b74b58ec955f2133f37552864ac5 | p1@Zfp42 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr8:44392404..44392412,-#_dcf0b74b58ec955f2133f37552864ac5 | p3@Zfp42 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr9:114472360..114472371,-#_dcf0b74b58ec955f2133f37552864ac5 | p@chr9:114472360..114472371, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr16:53576572..53576579,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr16:53576572..53576579, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:172371713..172371724,+#_dcf0b74b58ec955f2133f37552864ac5 | p@chr2:172371713..172371724, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:55557416..55557422,+#_dcf0b74b58ec955f2133f37552864ac5 | p13@Cmtm5 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr1:174143273..174143293,-#_dcf0b74b58ec955f2133f37552864ac5 | p@chr1:174143273..174143293, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr8:109128151..109128162,+#_dcf0b74b58ec955f2133f37552864ac5 | p5@Cdh1 |
| 2.21e-65 | FFCP PHASE2:Mm9::chr2:122084320..122084337,+#_5a30c14884b2cc03cc2d80e8aa662f7a | p@chr2:122084320..122084337, + |
| 2.21e-65 | FFCP PHASE2:Mm9::chrX:132804817..132804822,+#_5a30c14884b2cc03cc2d80e8aa662f7a | p5@Ngfrap1 |
