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{{UBERON
{{UBERON
|id=UBERON:0000924
|alt_id=UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
|name=ectoderm
|namespace=
|def="Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
|xref=AAO:0000137;;BILA:0000036;;BTO:0000315;;EFO:0000414;;EHDAA2:0000428;;EMAPA:16069;;EV:0100003;;FBbt:00000111;;FMA:69070;;GAID:1304;;MAT:0000155;;MAT:0000173;;MESH:A.16.254.425.273;;MIAA:0000173;;ncithesaurus:Ectoderm;;SCTID:362851007;;TAO:0000016;;VHOG:0000153;;XAO:0000001;;ZFA:0000016
|is_a=UBERON:0000923
|synonym="embryonic ectoderm" EXACT [VHOG:0000153]
|comment=
|comment=
|alt_id=UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0006601
|develops_from=UBERON:0006601
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000924
|is_a=UBERON:0000923
|is_obsolete=
|located_in=
|located_in=
|name=ectoderm
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="embryonic ectoderm" EXACT [VHOG:0000153]
|union_of=
|xref=AAO:0000137;;BILA:0000036;;BTO:0000315;;EFO:0000414;;EHDAA2:0000428;;EMAPA:16069;;EV:0100003;;FBbt:00000111;;FMA:69070;;GAID:1304;;http://upload.wikimedia.org/wikipedia/commons/1/19/Gray32.png;;MAT:0000155;;MAT:0000173;;MESH:A.16.254.425.273;;MIAA:0000173;;ncithesaurus:Ectoderm;;SCTID:362851007;;TAO:0000016;;VHOG:0000153;;XAO:0000001;;ZFA:0000016
}}
}}

Latest revision as of 17:11, 12 September 2014

Name:ectoderm
Namespace:FANTOM
Definition:"Primary germ layer that is the outer of the embryo's three germ layers and gives rise to epidermis and neural tissue." [Wikipedia:Ectoderm]
Xrefs:
links:

AAO:0000137
BILA:0000036
BTO:0000315
EFO:0000414
EHDAA2:0000428
EMAPA:16069
EV:0100003
FBbt:00000111
FMA:69070
GAID:1304
[ Gray32.png Gray32.png]
MAT:0000155
MAT:0000173
MESH:A.16.254.425.273
MIAA:0000173
ncithesaurus:Ectoderm
SCTID:362851007
TAO:0000016
VHOG:0000153
XAO:0000001

ZFA:0000016
Synonyms: "embryonic ectoderm" EXACT [VHOG:0000153]
Alt_id: UBERON:FBbt_00000111-FMA_69070-MIAA_0000173-XAO_0000001-ZFA_0000016
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000923(germ layer)
develops_from:UBERON:0006601(presumptive ectoderm)



Children

develops from:UBERON:0000007 (pituitary gland),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0001016 (nervous system),UBERON:0002346 (neurectoderm),UBERON:0004121 (ectoderm-derived structure),UBERON:0004906 (ectodermal part of digestive tract),UBERON:0005497 (non-neural ectoderm),UBERON:0006268 (notochordal process),UBERON:0008425 (mammary ridge),UBERON:0010371 (ecto-epithelium),UBERON:0016879 (future central nervous system)
part of:UBERON:0000076 (external ectoderm),CL:0000221 (ectodermal cell),UBERON:0000930 (stomodeum),UBERON:0003051 (ear vesicle),UBERON:0005085 (ectodermal placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000924 (ectoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Primary germ layer that is the outer of the embryonic germ layers and gives rise to epidermis and neural tissue.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.