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{{UBERON
{{UBERON
|id=UBERON:0001004
|alt_id=UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
|name=respiratory system
|anatomical_img_id=FMA:7158
|namespace=
|def="Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system]
|xref=AAO:0000541;;BTO:0000203;;EFO:0000804;;EHDAA:2203;;EHDAA2:0001604;;EMAPA:16727;;EV:0100036;;FMA:7158;;GAID:78;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png;;MA:0000327;;MAT:0000030;;MESH:A.04;;MIAA:0000030;;ncithesaurus:Respiratory_System;;OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA;;SCTID:278197002;;TAO:0000272;;VHOG:0000202;;XAO:0000117;;ZFA:0000272
|is_a=UBERON:0000467
|synonym="apparatus respiratorius" EXACT [];;"apparatus respiratorius " RELATED [BTO:0000203];;"Atmungssystem" RELATED [BTO:0000203];;"respiratory system" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=This class was created automatically from a combination of ontologies
|alt_id=UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
|disjoint_from=UBERON:0001007;;UBERON:0001008;;UBERON:0001009;;UBERON:0001016;;UBERON:0001033;;UBERON:0001434;;UBERON:0002204;;UBERON:0002294;;UBERON:0002330;;UBERON:0002390;;UBERON:0002405;;UBERON:0002416;;UBERON:0002423;;UBERON:0004456
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system]
|subset=functional_classification;;uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=UBERON:0001007;;UBERON:0001008;;UBERON:0001009;;UBERON:0001016;;UBERON:0001033;;UBERON:0001434;;UBERON:0002204;;UBERON:0002294;;UBERON:0002330;;UBERON:0002390;;UBERON:0002405;;UBERON:0002416;;UBERON:0002423;;UBERON:0004456
|has_quality=
|has_quality=
|id=UBERON:0001004
|is_a=UBERON:0000467
|is_obsolete=
|located_in=
|located_in=
|name=respiratory system
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string
|subset=functional_classification;;uberon_slim;;vertebrate_core
|synonym="apparatus respiratorius" EXACT [];;"apparatus respiratorius " RELATED [BTO:0000203];;"Atmungssystem" RELATED [BTO:0000203];;"respiratory system" EXACT [];;"systema respiratorium" RELATED LATIN [Wikipedia:Respiratory_system]
|union_of=
|xref=AAO:0000541;;BTO:0000203;;EFO:0000804;;EHDAA2:0001604;;EHDAA:2203;;EMAPA:16727;;EV:0100036;;FMA:7158;;GAID:78;;http://upload.wikimedia.org/wikipedia/commons/5/5e/Respiratory_system_complete_en.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Respiratory_system_complete_en.svg/200px-Respiratory_system_complete_en.svg.png;;MA:0000327;;MAT:0000030;;MESH:A.04;;MIAA:0000030;;ncithesaurus:Respiratory_System;;OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA;;SCTID:278197002;;TAO:0000272;;VHOG:0000202;;XAO:0000117;;ZFA:0000272
}}
}}

Latest revision as of 17:13, 12 September 2014

Name:respiratory system
Namespace:FANTOM
Definition:"Functional system which consists of structures involved in respiration.." [Wikipedia:Respiratory_system]
Xrefs:
links:

AAO:0000541
BTO:0000203
EFO:0000804
EHDAA2:0001604
EHDAA:2203
EMAPA:16727
EV:0100036
FMA:7158
GAID:78
[1]
[ 200px-Respiratory_system_complete_en.svg.png 200px-Respiratory_system_complete_en.svg.png]
MA:0000327
MAT:0000030
MESH:A.04
MIAA:0000030
ncithesaurus:Respiratory_System
OpenCyc:Mx4rvVjzFJwpEbGdrcN5Y29ycA
SCTID:278197002
TAO:0000272
VHOG:0000202
XAO:0000117

ZFA:0000272
Synonyms: "apparatus respiratorius" EXACT []
"apparatus respiratorius " RELATED [BTO:0000203]
"Atmungssystem" RELATED [BTO:0000203]
"respiratory system" EXACT []
"systema respiratorium" RELATED LATIN [Wikipedia:Respiratory_system]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FBbt_00005024-FMA_7158-MA_0000327-MIAA_0000030-XAO_0000117-ZFA_0000272
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000467(anatomical system)
disjoint_from:UBERON:0001007(digestive system),UBERON:0001008(renal system),UBERON:0001009(circulatory system),UBERON:0001016(nervous system),UBERON:0001033(gustatory system),UBERON:0001434(skeletal system),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system)
part of:UBERON:0000004 (olfactory apparatus),UBERON:0000065 (respiratory tract),UBERON:0000171 (respiration organ),UBERON:0001005 (respiratory airway),UBERON:0001042 (chordate pharynx),UBERON:0001103 (diaphragm),UBERON:0001825 (paranasal sinus),UBERON:0003469 (respiratory system artery),UBERON:0003504 (respiratory system blood vessel),UBERON:0003643 (respiratory system arterial blood vessel),UBERON:0003831 (respiratory system muscle),UBERON:0004225 (respiratory system smooth muscle),UBERON:0004785 (respiratory system mucosa),UBERON:0004807 (respiratory system epithelium),UBERON:0004830 (respiratory system skeletal muscle),UBERON:0004903 (bronchoalveolar duct junction)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001004 (respiratory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "The anatomical system in which the exchange of oxygen and carbon dioxide between the organism and its environment.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.