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{{UBERON
{{UBERON
|id=UBERON:0001130
|name=vertebral column
|namespace=
|def="." [Wikipedia:Vertebral_column]
|xref=AAO:0000699;;AAO:0000734;;BTO:0000818;;EFO:0001369;;EHDA:10119;;EHDAA:2895;;EMAPA:16666;;FMA:13478;;GAID:106;;galen:SpinalColumn;;MA:0002416;;MESH:A.02.835.232.834;;ncithesaurus:Vertebral_Column;;NIF_Subcellular:sao1145756102;;OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA;;OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA;;SCTID:44300000;;TAO:0001559;;VHOG:0001142;;XAO:0003074;;ZFA:0001559
|is_a=UBERON:0000075;;UBERON:0009568
|synonym="backbone" NARROW [FMA:13478];;"columna vertebralis" RELATED [BTO:0000818];;"dorsal spine" RELATED [BTO:0000818];;"spinal column" RELATED [MESH:A.02.835.232.834];;"spine" BROAD [FMA:13478];;"vertebral column skeleton" RELATED [AAO:0000699]
|comment=
|alt_id=UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
|alt_id=UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
|disjoint_from=
|anatomical_img_id=FMA:13478
|union_of=
|comment=Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton
|created_by=
|created_by=
|obo_creation_date=
|def="Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func
|subset=uberon_slim;;vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0001130
|is_a=UBERON:0000075 ;;UBERON:0004120
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001137;;UBERON:0002090
|name=vertebral column
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|namespace=FANTOM
|is_obsolete=
|obo_creation_date=
|part_of=UBERON:0011138
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string
|subset=uberon_slim;;vertebrate_core
|synonym="backbone" NARROW [FMA:13478];;"columna vertebralis" RELATED [BTO:0000818];;"spinal column" RELATED [MESH:A.02.835.232.834];;"spine" BROAD [FMA:13478];;"vertebral column skeleton" NARROW [AAO:0000699]
|union_of=
|xref=AAO:0000699;;AAO:0000734;;BTO:0000818;;EFO:0001369;;EHDA:10119;;EMAPA:16666;;FMA:13478;;GAID:106;;galen:SpinalColumn;;MA:0002416;;MESH:A.02.835.232.834;;ncithesaurus:Spinal_Cord_Column;;ncithesaurus:Vertebral_Column;;NIF_Subcellular:sao1145756102;;OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA;;OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA;;OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA;;SCTID:44300000;;TAO:0001559;;VHOG:0001142;;VSAO:0000185;;XAO:0003074;;ZFA:0001559
}}
}}

Latest revision as of 17:16, 12 September 2014

Name:vertebral column
Namespace:FANTOM
Definition:"Subdivision of skeletal system that consists of all the vertebra and associated skeletal elements and joints in the body." [https://sourceforge.net/tracker/?func
Xrefs:
links:

AAO:0000699
AAO:0000734
BTO:0000818
EFO:0001369
EHDA:10119
EMAPA:16666
FMA:13478
GAID:106
galen:SpinalColumn
MA:0002416
MESH:A.02.835.232.834
ncithesaurus:Spinal_Cord_Column
ncithesaurus:Vertebral_Column
NIF_Subcellular:sao1145756102
OpenCyc:Mx4rv2j-CpwpEbGdrcN5Y29ycA
OpenCyc:Mx4rv6GF55wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVkFEpwpEbGdrcN5Y29ycA
SCTID:44300000
TAO:0001559
VHOG:0001142
VSAO:0000185
XAO:0003074

ZFA:0001559
Synonyms: "backbone" NARROW [FMA:13478]
"columna vertebralis" RELATED [BTO:0000818]
"spinal column" RELATED [MESH:A.02.835.232.834]
"spine" BROAD [FMA:13478]
"vertebral column skeleton" NARROW [AAO:0000699]
Comments:Editor notes: Note that in contrast to VSAO, this is a subset of the skeletal system, and thus includes intervertebral joints, cartilage and ligaments etc. Some ontologies such as AAO seem to purely refer to the skeleton
Alt_id: UBERON:FMA_13478-MA_0002416-XAO_0003074-ZFA_0001559
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0011138(post-cranial axial skeletal system)



Children

part of:UBERON:0001468 (intervertebral joint),UBERON:0002412 (vertebra),UBERON:0010913 (vertebral element),UBERON:0011094 (vertebra cartilage element),UBERON:0011095 (vertebra pre-cartilage condensation),UBERON:0015005 (vertebra endochondral element)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001130 (vertebral column), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.25e-162FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_064f8942c8d518be2d7e1aa05ba7dde6p@chr3:174737010..174737023, +
1.25e-162FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_064f8942c8d518be2d7e1aa05ba7dde6p@chr3:174737010..174737023, +
3.92e-140FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_35572683d3260e5e76fcf2643420fe90p4@PAX1
3.92e-140FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_35572683d3260e5e76fcf2643420fe90p4@PAX1
4.22e-99FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_caee173b3d911537b9c3f1175e869476p@chr5:30104176..30104187, -
4.22e-99FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_caee173b3d911537b9c3f1175e869476p@chr5:30104176..30104187, -
1.06e-78FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_1eec87cddf1a27370abd1044e5f42979p4@NKX3-2
1.06e-78FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_1eec87cddf1a27370abd1044e5f42979p4@NKX3-2
2.52e-71FFCP PHASE2:Hg19::chr9:114135497..114135526,-#_be6ad71e01cf3cb7640e17d4c841bf76p@chr9:114135497..114135526, -
2.52e-71FFCP PHASE1:Hg19::chr9:114135497..114135526,-#_be6ad71e01cf3cb7640e17d4c841bf76p@chr9:114135497..114135526, -
7.4e-71FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_84ac457b9863252ccb3ed92d596842d3p@chr2:241897125..241897142, -
7.4e-71FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_84ac457b9863252ccb3ed92d596842d3p@chr2:241897125..241897142, -
6.33e-70FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_3227e32b1653790ce02a24830d874a07p@chr3:80727046..80727051, -
6.33e-70FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_3227e32b1653790ce02a24830d874a07p@chr3:80727046..80727051, -
4.8e-67FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_661ebfea7bfcc412bb6636a613b3d4dbp15@SNED1
4.8e-67FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_661ebfea7bfcc412bb6636a613b3d4dbp15@SNED1
1.24e-66FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_eadbd0d9c7e97252fb06c29825383587p20@CAPZB
1.24e-66FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_eadbd0d9c7e97252fb06c29825383587p20@CAPZB
1.26e-62FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_7e1ecec5701489e1c3c3f0015ecaa53fp@chr1:19778678..19778689, -
1.26e-62FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_7e1ecec5701489e1c3c3f0015ecaa53fp@chr1:19778678..19778689, -
1.1e-59FFCP PHASE1:Hg19::chr2:241897189..241897221,-#_65b4eecbc31f1d6234b8b3920d206fd5p@chr2:241897189..241897221, -
1.1e-59FFCP PHASE2:Hg19::chr2:241897189..241897221,-#_65b4eecbc31f1d6234b8b3920d206fd5p@chr2:241897189..241897221, -
1.55e-57FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_ad752c05861540ef1988b1852853aeb6p1@uc010aki.1
1.55e-57FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_ad752c05861540ef1988b1852853aeb6p1@uc010aki.1
4.09e-56FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_c246049be491788542845103acfc675ep6@SIX4
4.09e-56FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_c246049be491788542845103acfc675ep6@SIX4
3.74e-53FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_507cf5ec7703e69e8f69fcb1ac3edd45p3@uc010aki.1
3.74e-53FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_507cf5ec7703e69e8f69fcb1ac3edd45p3@uc010aki.1
1.15e-51FFCP PHASE1:Hg19::chr20:21687260..21687270,+#_1c7c681852de2671847350a0bbd0844bp3@PAX1
1.15e-51FFCP PHASE2:Hg19::chr20:21687260..21687270,+#_1c7c681852de2671847350a0bbd0844bp3@PAX1
2.3e-51FFCP PHASE1:Hg19::chr10:81923378..81923389,-#_635dc743d1c93e4b5aed819ac97aeca4p@chr10:81923378..81923389, -
2.3e-51FFCP PHASE2:Hg19::chr10:81923378..81923389,-#_635dc743d1c93e4b5aed819ac97aeca4p@chr10:81923378..81923389, -
3.24e-51FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_b53efd6dcf762201cccf54c5e3c24110p@chr2:12248310..12248334, -
3.24e-51FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_b53efd6dcf762201cccf54c5e3c24110p@chr2:12248310..12248334, -
8.0e-51FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_913887ee090bd83e430695e4f9ae7556p19@HDAC9
8.0e-51FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_913887ee090bd83e430695e4f9ae7556p19@HDAC9
5.06e-49FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_3354b5c7dc83a002093eab52f99e640ep@chr7:158224707..158224729, -
5.06e-49FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_3354b5c7dc83a002093eab52f99e640ep@chr7:158224707..158224729, -
5.24e-48FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_5dd9b3d721f7596d01b8c900ef070f7ep@chr1:65888177..65888194, +
5.24e-48FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_5dd9b3d721f7596d01b8c900ef070f7ep@chr1:65888177..65888194, +
2.98e-45FFCP PHASE2:Hg19::chr4:13546583..13546593,-#_b0ab89a934a2f0fadab049b66ab87642p3@NKX3-2
2.98e-45FFCP PHASE1:Hg19::chr4:13546583..13546593,-#_b0ab89a934a2f0fadab049b66ab87642p3@NKX3-2
2.92e-44FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_3da5f3a6ebb74b1a32776ccedb60d137p1@MGC27382
2.92e-44FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_3da5f3a6ebb74b1a32776ccedb60d137p1@MGC27382
1.71e-43FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_74e99504b944474bd068a6b37d7347c0p18@HDAC9
1.71e-43FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_74e99504b944474bd068a6b37d7347c0p18@HDAC9
1.48e-40FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_4529454966f8b2262dd1ab4c480c83fap@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_4529454966f8b2262dd1ab4c480c83fap@chr13:24914614..24914622, -
1.48e-40FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_4529454966f8b2262dd1ab4c480c83fap@chr9:33028063..33028067, -
1.48e-40FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_4529454966f8b2262dd1ab4c480c83fap@chr9:33028063..33028067, -
1.64e-40FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_00857bc2ac7a1ff8a42a97a75cd9eaa0p1@PAX1
1.64e-40FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_00857bc2ac7a1ff8a42a97a75cd9eaa0p1@PAX1
1.81e-40FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_d19065103c6641805c1f98becbb5ad9ep5@PTGFR
1.81e-40FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_d19065103c6641805c1f98becbb5ad9ep5@PTGFR
2.13e-40FFCP PHASE1:Hg19::chr2:241897363..241897398,+#_025b7c41ad51a94f29e84b44b25b7f79p@chr2:241897363..241897398, +
2.13e-40FFCP PHASE2:Hg19::chr2:241897363..241897398,+#_025b7c41ad51a94f29e84b44b25b7f79p@chr2:241897363..241897398, +
3.04e-39FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_1c3507a01750a630d392b7e1c7e3892ap2@PAX1
3.04e-39FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_1c3507a01750a630d392b7e1c7e3892ap2@PAX1
7.19e-39FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_69ccdeb9e893850fddcee4e082bb75ddp16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_69ccdeb9e893850fddcee4e082bb75ddp16@HDAC9
7.19e-39FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_69ccdeb9e893850fddcee4e082bb75ddp@chr5:140887761..140887777, +
7.19e-39FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_69ccdeb9e893850fddcee4e082bb75ddp@chr5:140887761..140887777, +
1.24e-38FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_3637856b1cf72d4938e47cdbb18761f0p4@NUP54
1.24e-38FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_3637856b1cf72d4938e47cdbb18761f0p4@NUP54
2.08e-38FFCP PHASE1:Hg19::chr2:241938405..241938416,+#_3bc61b66ccb84223a0407212c3abb86ep@chr2:241938405..241938416, +
2.08e-38FFCP PHASE2:Hg19::chr2:241938405..241938416,+#_3bc61b66ccb84223a0407212c3abb86ep@chr2:241938405..241938416, +
3.34e-38FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_9a2cfb4245b46f146625c16a1b032a65p1@NKX3-2
3.34e-38FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_9a2cfb4245b46f146625c16a1b032a65p1@NKX3-2
3.68e-38FFCP PHASE2:Hg19::chr6:158490457..158490470,+#_12317a54f4b535c27cf3a9ba75044e01p10@SYNJ2
3.68e-38FFCP PHASE1:Hg19::chr6:158490457..158490470,+#_12317a54f4b535c27cf3a9ba75044e01p10@SYNJ2
5.39e-38FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_a1db76c06fc96d5930ec6d4678fbd41cp@chr9:16138889..16138902, -
5.39e-38FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_a1db76c06fc96d5930ec6d4678fbd41cp@chr9:16138889..16138902, -
8.66e-38FFCP PHASE2:Hg19::chr8:78311303..78311320,+#_72d4267c606ee356433bc0e98b34de13p2@ENST00000518706
8.66e-38FFCP PHASE1:Hg19::chr8:78311303..78311320,+#_72d4267c606ee356433bc0e98b34de13p2@ENST00000518706
2.96e-37FFCP PHASE2:Hg19::chr21:39705383..39705394,-#_8ff60ac03bd3654405d85872ecc3d775p1@ENST00000436845
2.96e-37FFCP PHASE1:Hg19::chr21:39705383..39705394,-#_8ff60ac03bd3654405d85872ecc3d775p1@ENST00000436845
6.92e-37FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_d0f5d7b414472c75521c3d4b4b0f2dc1p12@CDK5RAP2
6.92e-37FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_d0f5d7b414472c75521c3d4b4b0f2dc1p12@CDK5RAP2
3.28e-36FFCP PHASE1:Hg19::chr1:78695298..78695311,+#_8485234a4dfc90a5bd441a6c18d63b48p1@ENST00000413519
3.28e-36FFCP PHASE2:Hg19::chr1:78695298..78695311,+#_8485234a4dfc90a5bd441a6c18d63b48p1@ENST00000413519
9.62e-35FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_809c1c9946ba1b06fbb27fba356212ebp4@PAX9
9.62e-35FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_809c1c9946ba1b06fbb27fba356212ebp4@PAX9
1.8e-34FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_2d31feb1df87f3077589543ad87ec909p@chr7:100202784..100202796, -
1.8e-34FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_2d31feb1df87f3077589543ad87ec909p@chr7:100202784..100202796, -
3.69e-34FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_c34e8a5cc94493bffacfe3597dde5c6fp8@HOXC6
3.69e-34FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_c34e8a5cc94493bffacfe3597dde5c6fp8@HOXC6
5.52e-34FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_9f911177112e0b7b0ae7f13f3bcce1c3p6@CCDC86
5.52e-34FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_9f911177112e0b7b0ae7f13f3bcce1c3p6@CCDC86
1.43e-33FFCP PHASE1:Hg19::chr20:21695435..21695452,+#_a55bc64bf561b8874941c7b07e923764p@chr20:21695435..21695452, +
1.43e-33FFCP PHASE2:Hg19::chr20:21695435..21695452,+#_a55bc64bf561b8874941c7b07e923764p@chr20:21695435..21695452, +
5.36e-33FFCP PHASE1:Hg19::chr16:70795228..70795237,+#_3b8490589706574bfc67723df156b900p@chr16:70795228..70795237, +
5.36e-33FFCP PHASE2:Hg19::chr16:70795228..70795237,+#_3b8490589706574bfc67723df156b900p@chr16:70795228..70795237, +
1.05e-32FFCP PHASE1:Hg19::chr3:158384350..158384362,-#_4bb71a50685ec7e087e3c141bda1fa7ap@chr3:158384350..158384362, -
1.05e-32FFCP PHASE2:Hg19::chr3:158384350..158384362,-#_4bb71a50685ec7e087e3c141bda1fa7ap@chr3:158384350..158384362, -
1.7e-32FFCP PHASE2:Hg19::chr2:158345440..158345449,-#_8abdb36bfff835f146d50b1edc91727ap9@CYTIP
1.7e-32FFCP PHASE1:Hg19::chr2:158345440..158345449,-#_8abdb36bfff835f146d50b1edc91727ap9@CYTIP
2.34e-32FFCP PHASE2:Hg19::chr18:12012068..12012098,+#_dc4b73bf0183f38abc1fcfcb4480eddbp@chr18:12012068..12012098, +
2.34e-32FFCP PHASE1:Hg19::chr18:12012068..12012098,+#_dc4b73bf0183f38abc1fcfcb4480eddbp@chr18:12012068..12012098, +
2.79e-31FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_65d7c99a4b1bc94a2c1ca995798351e7p1@ENST00000555639
2.79e-31FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_65d7c99a4b1bc94a2c1ca995798351e7p1@ENST00000555639










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the vertebra in the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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