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{{UBERON
{{UBERON
|id=UBERON:0002018
|alt_id=UBERON:FMA_66762-MA_0000114
|name=synovial membrane of synovial joint
|namespace=
|def="Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
|xref=AEO:0000181;;BTO:0001823;;EFO:0001393;;EHDAA2_RETIRED:0003181;;EV:0100143;;FMA:9865;;GAID:264;;galen:SynovialMembrane;;http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png;;MA:0000114;;MESH:A.02.835.583.443.800;;ncithesaurus:Synovial_Membrane;;SCTID:361828005;;VHOG:0001282
|is_a=UBERON:0006915;;UBERON:0007616
|synonym="membrana synovialis capsulae articularis" EXACT LATIN [Wikipedia:Synovial_membrane];;"stratum synoviale" EXACT [FMA:66762, FMA:TA];;"synovial layer" BROAD [FMA:66762];;"synovial membrane" BROAD [AEO:0000181];;"synovium" BROAD [BTO:0001823, VHOG:0001282]
|comment=
|comment=
|alt_id=UBERON:FMA_66762-MA_0000114
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002018
|is_a=UBERON:0006915 ;;UBERON:0007616 ;;UBERON:0012275
|is_obsolete=
|located_in=
|located_in=
|name=synovial membrane of synovial joint
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002217
|part_of=UBERON:0002217
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="membrana synovialis capsulae articularis" EXACT LATIN [Wikipedia:Synovial_membrane];;"stratum synoviale" EXACT [FMA:66762, FMA:TA];;"synovial layer" BROAD [FMA:66762];;"synovial membrane" BROAD [AEO:0000181];;"synovium" BROAD [BTO:0001823, VHOG:0001282]
|union_of=
|xref=AEO:0000181;;BTO:0001823;;EFO:0001393;;EHDAA2_RETIRED:0003181;;EV:0100143;;FMA:9865;;GAID:264;;galen:SynovialMembrane;;http://upload.wikimedia.org/wikipedia/commons/1/19/Joint.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Synovium.png/200px-Synovium.png;;MA:0000114;;MESH:A.02.835.583.443.800;;ncithesaurus:Synovial_Membrane;;SCTID:361828005;;VHOG:0001282
}}
}}

Latest revision as of 17:24, 12 September 2014

Name:synovial membrane of synovial joint
Namespace:FANTOM
Definition:"Soft tissue that lines the non-cartilaginous surfaces within joints with cavities (synovial joints)." [Wikipedia:Synovial_membrane]
Xrefs:
links:

AEO:0000181
BTO:0001823
EFO:0001393
EHDAA2_RETIRED:0003181
EV:0100143
FMA:9865
GAID:264
galen:SynovialMembrane
[ Joint.png Joint.png]
[ 200px-Synovium.png 200px-Synovium.png]
MA:0000114
MESH:A.02.835.583.443.800
ncithesaurus:Synovial_Membrane
SCTID:361828005

VHOG:0001282
Synonyms: "membrana synovialis capsulae articularis" EXACT LATIN [Wikipedia:Synovial_membrane]
"stratum synoviale" EXACT [FMA:66762, FMA:TA]
"synovial layer" BROAD [FMA:66762]
"synovial membrane" BROAD [AEO:0000181]
"synovium" BROAD [BTO:0001823, VHOG:0001282]
Alt_id: UBERON:FMA_66762-MA_0000114
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0006915(stratified squamous epithelium),UBERON:0007616(layer of synovial tissue),UBERON:0012275(meso-epithelium)
part_of:UBERON:0002217(synovial joint)



Children

part of:CL:0000214 (synovial cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002018 (synovial membrane of synovial joint), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data