Personal tools

UBERON:0002473: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0002473
|alt_id=UBERON:MA_0002721-FMA_67930
|name=intercerebral commissure
|namespace=
|def="Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930]
|xref=FMA:67930;;MA:0002721
|is_a=UBERON:0001020;;UBERON:0002791;;UBERON:0005970
|synonym="brain commissure" NARROW [];;"interhemispheric commissure" RELATED [MA:0002721]
|comment=
|comment=
|alt_id=UBERON:MA_0002721-FMA_67930
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002473
|is_a=UBERON:0005970 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0001893;;UBERON:0002437
|name=intercerebral commissure
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002437
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="brain commissure" NARROW [];;"interhemispheric commissure" RELATED [MA:0002721]
|union_of=
|xref=FMA:67930;;MA:0002721
}}
}}

Latest revision as of 17:32, 12 September 2014

Name:intercerebral commissure
Namespace:FANTOM
Definition:"Class of unpaired telencephalic white matter structures consisting of fiber pathways which project across the midsagittal plane and which serve to interconnect telencephalic structures lying within the contralateral cerebral hemisphere[FMA]." [FMA:67930]
Xrefs:
links:

FMA:67930

MA:0002721
Synonyms: "brain commissure" NARROW []
"interhemispheric commissure" RELATED [MA:0002721]
Alt_id: UBERON:MA_0002721-FMA_67930

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005970(brain commissure),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002437(cerebral hemisphere white matter)



Children

is a:UBERON:0002336 (corpus callosum)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002473 (intercerebral commissure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr5:60927228..60927236,-#_e20a45be5a30578a5cf3d20a7b304cbap3@BC032909, p3@BC032910
5.42e-195FFCP PHASE2:Hg19::chr15:93827399..93827403,+#_e20a45be5a30578a5cf3d20a7b304cbap@chr15:93827399..93827403, +
5.42e-195FFCP PHASE1:Hg19::chr15:93827399..93827403,+#_e20a45be5a30578a5cf3d20a7b304cbap@chr15:93827399..93827403, +
5.42e-195FFCP PHASE2:Hg19::chr17:73689469..73689476,-#_e20a45be5a30578a5cf3d20a7b304cbap@chr17:73689469..73689476, -
5.42e-195FFCP PHASE1:Hg19::chr14:36462819..36462832,+#_e20a45be5a30578a5cf3d20a7b304cbap@chr14:36462819..36462832, +
5.42e-195FFCP PHASE2:Hg19::chr14:36462819..36462832,+#_e20a45be5a30578a5cf3d20a7b304cbap@chr14:36462819..36462832, +
5.42e-195FFCP PHASE1:Hg19::chr17:73689469..73689476,-#_e20a45be5a30578a5cf3d20a7b304cbap@chr17:73689469..73689476, -
5.42e-195FFCP PHASE2:Hg19::chr5:60927228..60927236,-#_e20a45be5a30578a5cf3d20a7b304cbap3@BC032909, p3@BC032910
9.37e-99FFCP PHASE2:Hg19::chr11:110248322..110248329,-#_124b7bb0ccd10920c1cc32c775493774p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE1:Hg19::chr11:110248322..110248329,-#_124b7bb0ccd10920c1cc32c775493774p@chr11:110248322..110248329, -
9.37e-99FFCP PHASE2:Hg19::chr2:232548018..232548022,-#_124b7bb0ccd10920c1cc32c775493774p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr2:232548018..232548022,-#_124b7bb0ccd10920c1cc32c775493774p@chr2:232548018..232548022, -
9.37e-99FFCP PHASE1:Hg19::chr14:33926303..33926307,-#_124b7bb0ccd10920c1cc32c775493774p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE2:Hg19::chr14:33926303..33926307,-#_124b7bb0ccd10920c1cc32c775493774p@chr14:33926303..33926307, -
9.37e-99FFCP PHASE1:Hg19::chr12:78359873..78359882,+#_124b7bb0ccd10920c1cc32c775493774p41@NAV3
9.37e-99FFCP PHASE2:Hg19::chr12:78359873..78359882,+#_124b7bb0ccd10920c1cc32c775493774p41@NAV3
2.55e-98FFCP PHASE1:Hg19::chr3:15374659..15374696,-#_cdd98dd06f3a3530bed42dc53a83cddcp10@SH3BP5
2.55e-98FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_cdd98dd06f3a3530bed42dc53a83cddcp@chr19:35788742..35788752, +
2.55e-98FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_cdd98dd06f3a3530bed42dc53a83cddcp@chr19:35788742..35788752, +
2.55e-98FFCP PHASE2:Hg19::chr3:15374659..15374696,-#_cdd98dd06f3a3530bed42dc53a83cddcp10@SH3BP5
1.23e-66FFCP PHASE2:Hg19::chr7:124391226..124391235,-#_08b0d80f11bbeed14f12ede65bcc7e64p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr17:72823919..72823924,-#_08b0d80f11bbeed14f12ede65bcc7e64p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE1:Hg19::chr7:124391226..124391235,-#_08b0d80f11bbeed14f12ede65bcc7e64p@chr7:124391226..124391235, -
1.23e-66FFCP PHASE2:Hg19::chr10:73479518..73479527,-#_08b0d80f11bbeed14f12ede65bcc7e64p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr10:73479518..73479527,-#_08b0d80f11bbeed14f12ede65bcc7e64p5@C10orf105
1.23e-66FFCP PHASE1:Hg19::chr12:78359680..78359686,+#_08b0d80f11bbeed14f12ede65bcc7e64p32@NAV3
1.23e-66FFCP PHASE2:Hg19::chr12:78359680..78359686,+#_08b0d80f11bbeed14f12ede65bcc7e64p32@NAV3
1.23e-66FFCP PHASE1:Hg19::chr17:72823919..72823924,-#_08b0d80f11bbeed14f12ede65bcc7e64p@chr17:72823919..72823924, -
1.23e-66FFCP PHASE2:Hg19::chr8:42037488..42037504,+#_08b0d80f11bbeed14f12ede65bcc7e64p@chr8:42037488..42037504, +
1.23e-66FFCP PHASE1:Hg19::chr8:42037488..42037504,+#_08b0d80f11bbeed14f12ede65bcc7e64p@chr8:42037488..42037504, +
2.39e-66FFCP PHASE2:Hg19::chr6:163681762..163681767,+#_29919590f7128cb8024bab1697d83dddp@chr6:163681762..163681767, +
2.39e-66FFCP PHASE2:Hg19::chr10:61043452..61043467,-#_29919590f7128cb8024bab1697d83dddp16@FAM13C
2.39e-66FFCP PHASE2:Hg19::chr10:25012236..25012245,-#_29919590f7128cb8024bab1697d83dddp24@ARHGAP21
2.39e-66FFCP PHASE1:Hg19::chr6:163681762..163681767,+#_29919590f7128cb8024bab1697d83dddp@chr6:163681762..163681767, +
2.39e-66FFCP PHASE1:Hg19::chr10:61043452..61043467,-#_29919590f7128cb8024bab1697d83dddp16@FAM13C
2.39e-66FFCP PHASE1:Hg19::chr10:25012236..25012245,-#_29919590f7128cb8024bab1697d83dddp24@ARHGAP21
4.66e-66FFCP PHASE1:Hg19::chr4:174293011..174293022,-#_faad662c046e6912382d84f51fa24526p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE2:Hg19::chr8:101522298..101522305,-#_faad662c046e6912382d84f51fa24526p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE1:Hg19::chr4:645709..645712,+#_faad662c046e6912382d84f51fa24526p15@PDE6B
4.66e-66FFCP PHASE2:Hg19::chr5:35089799..35089804,-#_faad662c046e6912382d84f51fa24526p20@PRLR
4.66e-66FFCP PHASE1:Hg19::chr8:101522298..101522305,-#_faad662c046e6912382d84f51fa24526p@chr8:101522298..101522305, -
4.66e-66FFCP PHASE2:Hg19::chr5:35089832..35089839,-#_faad662c046e6912382d84f51fa24526p26@PRLR
4.66e-66FFCP PHASE2:Hg19::chr17:40120071..40120085,+#_faad662c046e6912382d84f51fa24526p15@CNP
4.66e-66FFCP PHASE2:Hg19::chr7:129015806..129015815,+#_faad662c046e6912382d84f51fa24526p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089799..35089804,-#_faad662c046e6912382d84f51fa24526p20@PRLR
4.66e-66FFCP PHASE2:Hg19::chr7:129012882..129012891,-#_faad662c046e6912382d84f51fa24526p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE1:Hg19::chr17:40120071..40120085,+#_faad662c046e6912382d84f51fa24526p15@CNP
4.66e-66FFCP PHASE1:Hg19::chr7:129015806..129015815,+#_faad662c046e6912382d84f51fa24526p@chr7:129015806..129015815, +
4.66e-66FFCP PHASE1:Hg19::chr5:35089832..35089839,-#_faad662c046e6912382d84f51fa24526p26@PRLR
4.66e-66FFCP PHASE1:Hg19::chr7:129012882..129012891,-#_faad662c046e6912382d84f51fa24526p@chr7:129012882..129012891, -
4.66e-66FFCP PHASE2:Hg19::chr4:174293011..174293022,-#_faad662c046e6912382d84f51fa24526p@chr4:174293011..174293022, -
4.66e-66FFCP PHASE1:Hg19::chr13:99135698..99135706,+#_faad662c046e6912382d84f51fa24526p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr13:99135698..99135706,+#_faad662c046e6912382d84f51fa24526p@chr13:99135698..99135706, +
4.66e-66FFCP PHASE2:Hg19::chr4:645709..645712,+#_faad662c046e6912382d84f51fa24526p15@PDE6B
4.66e-66FFCP PHASE1:Hg19::chr14:91199850..91199861,-#_faad662c046e6912382d84f51fa24526p@chr14:91199850..91199861, -
4.66e-66FFCP PHASE2:Hg19::chr14:91199850..91199861,-#_faad662c046e6912382d84f51fa24526p@chr14:91199850..91199861, -
1.46e-50FFCP PHASE1:Hg19::chr6:170571770..170571782,-#_298e1309c495ddec0806adaac52affc1p2@LOC154449
1.46e-50FFCP PHASE2:Hg19::chr6:170571770..170571782,-#_298e1309c495ddec0806adaac52affc1p2@LOC154449
2.42e-50FFCP PHASE2:Hg19::chr19:15751984..15751994,+#_10d8ef9dea5ef2bdffb1d37e1538329bp6@CYP4F3
2.42e-50FFCP PHASE1:Hg19::chrX:103031196..103031205,-#_10d8ef9dea5ef2bdffb1d37e1538329bp@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr7:30202318..30202329,+#_10d8ef9dea5ef2bdffb1d37e1538329bp@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr19:15751984..15751994,+#_10d8ef9dea5ef2bdffb1d37e1538329bp6@CYP4F3
2.42e-50FFCP PHASE2:Hg19::chr4:74005833..74005844,-#_10d8ef9dea5ef2bdffb1d37e1538329bp@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr11:133996343..133996351,+#_10d8ef9dea5ef2bdffb1d37e1538329bp8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr11:133996343..133996351,+#_10d8ef9dea5ef2bdffb1d37e1538329bp8@JAM3
2.42e-50FFCP PHASE1:Hg19::chr7:30202318..30202329,+#_10d8ef9dea5ef2bdffb1d37e1538329bp@chr7:30202318..30202329, +
2.42e-50FFCP PHASE1:Hg19::chr4:74005833..74005844,-#_10d8ef9dea5ef2bdffb1d37e1538329bp@chr4:74005833..74005844, -
2.42e-50FFCP PHASE2:Hg19::chr10:7454514..7454525,-#_10d8ef9dea5ef2bdffb1d37e1538329bp@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr10:7454514..7454525,-#_10d8ef9dea5ef2bdffb1d37e1538329bp@chr10:7454514..7454525, -
2.42e-50FFCP PHASE1:Hg19::chr12:106697974..106697990,-#_10d8ef9dea5ef2bdffb1d37e1538329bp31@CKAP4
2.42e-50FFCP PHASE2:Hg19::chrX:103031196..103031205,-#_10d8ef9dea5ef2bdffb1d37e1538329bp@chrX:103031196..103031205, -
2.42e-50FFCP PHASE2:Hg19::chr12:106697974..106697990,-#_10d8ef9dea5ef2bdffb1d37e1538329bp31@CKAP4
3.99e-50FFCP PHASE1:Hg19::chr3:160203278..160203289,-#_49be9bd75723d6998d6de9dbb430ef6ep8@TRIM59
3.99e-50FFCP PHASE1:Hg19::chr6:164364681..164364684,-#_49be9bd75723d6998d6de9dbb430ef6ep@chr6:164364681..164364684, -
3.99e-50FFCP PHASE2:Hg19::chr9:20927844..20927855,+#_49be9bd75723d6998d6de9dbb430ef6ep@chr9:20927844..20927855, +
3.99e-50FFCP PHASE1:Hg19::chr9:20927844..20927855,+#_49be9bd75723d6998d6de9dbb430ef6ep@chr9:20927844..20927855, +
3.99e-50FFCP PHASE2:Hg19::chr17:36726052..36726061,-#_49be9bd75723d6998d6de9dbb430ef6ep@chr17:36726052..36726061, -
3.99e-50FFCP PHASE1:Hg19::chr17:36726052..36726061,-#_49be9bd75723d6998d6de9dbb430ef6ep@chr17:36726052..36726061, -
3.99e-50FFCP PHASE2:Hg19::chr11:45922629..45922637,+#_49be9bd75723d6998d6de9dbb430ef6ep@chr11:45922629..45922637, +
3.99e-50FFCP PHASE1:Hg19::chr11:45922629..45922637,+#_49be9bd75723d6998d6de9dbb430ef6ep@chr11:45922629..45922637, +
3.99e-50FFCP PHASE2:Hg19::chr3:160203278..160203289,-#_49be9bd75723d6998d6de9dbb430ef6ep8@TRIM59
3.99e-50FFCP PHASE2:Hg19::chr6:164364681..164364684,-#_49be9bd75723d6998d6de9dbb430ef6ep@chr6:164364681..164364684, -
6.58e-50FFCP PHASE2:Hg19::chr11:67190503..67190512,+#_b7d4c824875a4395a62cb108a371e405p8@CARNS1
6.58e-50FFCP PHASE2:Hg19::chr9:112191163..112191174,-#_b7d4c824875a4395a62cb108a371e405p10@PTPN3
6.58e-50FFCP PHASE2:Hg19::chr2:219610931..219610941,+#_b7d4c824875a4395a62cb108a371e405p13@TTLL4
6.58e-50FFCP PHASE2:Hg19::chr11:117585539..117585541,-#_b7d4c824875a4395a62cb108a371e405p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE1:Hg19::chr9:112191163..112191174,-#_b7d4c824875a4395a62cb108a371e405p10@PTPN3
6.58e-50FFCP PHASE1:Hg19::chr11:67190503..67190512,+#_b7d4c824875a4395a62cb108a371e405p8@CARNS1
6.58e-50FFCP PHASE1:Hg19::chr11:117585539..117585541,-#_b7d4c824875a4395a62cb108a371e405p@chr11:117585539..117585541, -
6.58e-50FFCP PHASE2:Hg19::chr6:133119649..133119655,-#_b7d4c824875a4395a62cb108a371e405p6@C6orf192
6.58e-50FFCP PHASE1:Hg19::chr2:219610931..219610941,+#_b7d4c824875a4395a62cb108a371e405p13@TTLL4
6.58e-50FFCP PHASE1:Hg19::chr12:99288459..99288464,-#_b7d4c824875a4395a62cb108a371e405p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr12:99288459..99288464,-#_b7d4c824875a4395a62cb108a371e405p38@ANKS1B
6.58e-50FFCP PHASE2:Hg19::chr4:7412700..7412704,+#_b7d4c824875a4395a62cb108a371e405p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE1:Hg19::chr6:133119649..133119655,-#_b7d4c824875a4395a62cb108a371e405p6@C6orf192
6.58e-50FFCP PHASE2:Hg19::chr3:190578500..190578506,-#_b7d4c824875a4395a62cb108a371e405p@chr3:190578500..190578506, -
6.58e-50FFCP PHASE1:Hg19::chr4:7412700..7412704,+#_b7d4c824875a4395a62cb108a371e405p@chr4:7412700..7412704, +
6.58e-50FFCP PHASE2:Hg19::chr3:10706167..10706179,-#_b7d4c824875a4395a62cb108a371e405p@chr3:10706167..10706179, -
6.58e-50FFCP PHASE2:Hg19::chrX:28605300..28605301,+#_b7d4c824875a4395a62cb108a371e405p8@IL1RAPL1
6.58e-50FFCP PHASE1:Hg19::chr3:190578500..190578506,-#_b7d4c824875a4395a62cb108a371e405p@chr3:190578500..190578506, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002473&oldid=3277466"