UBERON:0002553: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552 | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002553 | |||
|is_a=UBERON:0000464 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=anatomical cavity | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="cavity" EXACT [] | ||
|union_of= | |||
|xref=EHDAA:2329;;EHDAA:2337;;EHDAA:2347;;EHDAA:293;;EHDAA:4741;;EHDAA:48;;EHDAA:638;;EHDAA:644;;EMAPA:16054;;FMA:67552;;galen:Cavity;;ncithesaurus:Lumen_Space;;NIF_GrossAnatomy:birnlex_1011 | |||
}} | }} |
Latest revision as of 17:33, 12 September 2014
Name: | anatomical cavity | |
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Namespace: | FANTOM | |
Definition: | "Anatomical space which contains portions of one or more body substances and is bounded by the internal surface of one maximally connected anatomical structure. Examples: cranial cavity, pharyngeal recess space, nasal cavity, tooth socket, cavity of serous sac, lumen of stomach, lumen of artery, fornix of vagina." [FMA:67552] | |
Xrefs: |
| |
Synonyms: | "cavity" EXACT [] | |
Alt_id: | UBERON:NIF_GrossAnatomy_birnlex_1011-FMA_67552 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000464(anatomical space) |
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Children
is a: | UBERON:0000167 (oral cavity),UBERON:0001707 (nasal cavity),UBERON:0001825 (paranasal sinus),UBERON:0002323 (body cavity),UBERON:0003886 (body cavity precursor),UBERON:0005606 (hyaloid cavity) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10095-102C5
- 10096-102C6 (testis, adult, pool2)
- 10198-103E9 (gall bladder, adult)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10093-102C3 (salivary gland, adult, pool1)
- 10095-102C5
- 10096-102C6 (testis, adult, pool2)
- 10198-103E9 (gall bladder, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002553 (anatomical cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data