UBERON:0003422: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=todo - check | |comment=todo - check | ||
|created_by= | |created_by= | ||
| | |def="a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0003422 | |||
|is_a=UBERON:0003104 ;;UBERON:0004120 ;;UBERON:0005292 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=mesenchyme of umbilical cord | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002331 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym="umbilical cord mesenchyme" EXACT [OBOL:automatic];;"Wharton's jelly" EXACT [EMAPA:26127] | ||
|union_of= | |||
|xref=EMAPA:26127;;SCTID:368069009 | |||
}} | }} |
Latest revision as of 17:40, 12 September 2014
Name: | mesenchyme of umbilical cord | |
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Namespace: | FANTOM | |
Definition: | "a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly] | |
Xrefs: |
| |
Synonyms: |
"umbilical cord mesenchyme" EXACT [OBOL:automatic] "Wharton's jelly" EXACT [EMAPA:26127] | |
Comments: | todo - check |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue) |
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part_of: | UBERON:0002331(umbilical cord) |
Children
part of: | CL:0002569 (mesenchymal stem cell of umbilical cord) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003422 (mesenchyme of umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data