UBERON:0004288: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons. | |comment=Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons. | ||
|created_by= | |created_by= | ||
| | |def="all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from=UBERON:0004770 | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004288 | |||
|is_a=UBERON:0000477 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=skeleton | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001434 | |part_of=UBERON:0001434 | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string | |||
|subset=uberon_slim | |||
|synonym="set of all bones" EXACT [];;"set of bones of body" EXACT [] | |||
|union_of= | |||
|xref=AEO:0000168;;EFO:0000806;;EHDAA2:0001843;;EHDAA:5047;;EHDAA:8005;;EHDAA:8041;;FMA:23875;;GAID:177;;galen:Skeleton;;MA:0003006;;MAT:0000032;;MESH:A.02.835;;MIAA:0000032;;OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA;;SCTID:361378004;;VSAO:0000026;;XAO:0004053 | |||
}} | }} | ||
Latest revision as of 17:45, 12 September 2014
| Name: | skeleton | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "all the bones and/or cartilaginous elements in the body. Together with the articular system, this comprises the skeletal system." [FMA:23875, UBERON:cjm, Wikipedia:Skeleton] | |
| Xrefs: |
| |
| Synonyms: |
"set of all bones" EXACT [] "set of bones of body" EXACT [] | |
| Comments: | Note that the source FMA definition has been modified here to include cartilage skeletons. We may wish to introduce subclasses for bony/cartilage skeletons. | |
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000477(anatomical cluster) |
|---|---|
| disjoint_from: | UBERON:0004770(articular system) |
| part_of: | UBERON:0001434(skeletal system) |
Children
| part of: | UBERON:0005863 (cartilaginous condensation),UBERON:0005866 (pre-cartilage condensation),UBERON:0010912 (subdivision of skeleton) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Mouse (Mus musculus)
- 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004288 (skeleton), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that consists of all the skeletal elements (eg., bone, cartilage, and teeth) of the body.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
