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{{UBERON
{{UBERON
|id=UBERON:0004348
|alt_id=
|name=optic eminence
|namespace=
|def="the embryonic structure that gives rise to the corneal ectoderm" [MP:0006305]
|xref=EHDAA:938;;EMAPA:16322;;EMAPA:17003;;RETIRED_EHDAA2:0001308;;VHOG:0001296
|is_a=UBERON:0000061
|synonym=
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="the embryonic structure that gives rise to the corneal ectoderm" [MP:0006305]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004348
|is_a=UBERON:0002050
|is_obsolete=
|located_in=
|located_in=
|name=optic eminence
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym=
|union_of=
|xref=EHDAA:938;;EMAPA:16322;;EMAPA:17003;;RETIRED_EHDAA2:0001308;;VHOG:0001296
}}
}}

Latest revision as of 17:45, 12 September 2014

Name:optic eminence
Namespace:FANTOM
Definition:"the embryonic structure that gives rise to the corneal ectoderm" [MP:0006305]
Xrefs:
links:

EHDAA:938
EMAPA:16322
EMAPA:17003
RETIRED_EHDAA2:0001308

VHOG:0001296

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002050(embryonic structure)



Children

develops from:UBERON:0000964 (cornea)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004348 (optic eminence), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.67e-66FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_bf13cc4c95c82d7554b569dc190dfdd2p2@KRT12
4.67e-66FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_bf13cc4c95c82d7554b569dc190dfdd2p2@KRT12
3.1e-50FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_7ecad7457c914e62276a66be9d89283dp@chr7:150910973..150910976, -
3.1e-50FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_7ecad7457c914e62276a66be9d89283dp@chr3:52362029..52362031, +
3.1e-50FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_7ecad7457c914e62276a66be9d89283dp@chr7:150910973..150910976, -
3.1e-50FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_7ecad7457c914e62276a66be9d89283dp@chr3:52362029..52362031, +
3.31e-40FFCP PHASE1:Hg19::chr12:53189894..53189905,-#_dcb121932a2e524d4813e434b17ba578p1@KRT3
3.31e-40FFCP PHASE2:Hg19::chr12:53189894..53189905,-#_dcb121932a2e524d4813e434b17ba578p1@KRT3
5.98e-34FFCP PHASE1:Hg19::chr22:30144620..30144638,-#_b71e9988c20b0fc3f5ca67672b626947p7@ZMAT5
5.98e-34FFCP PHASE2:Hg19::chr22:30144620..30144638,-#_b71e9988c20b0fc3f5ca67672b626947p7@ZMAT5
1.17e-33FFCP PHASE1:Hg19::chr8:124206334..124206344,+#_8fefb65c5651d417d9b0a6d1c52cfa8bp@chr8:124206334..124206344, +
1.17e-33FFCP PHASE2:Hg19::chr8:124206334..124206344,+#_8fefb65c5651d417d9b0a6d1c52cfa8bp@chr8:124206334..124206344, +
3.16e-29FFCP PHASE2:Hg19::chr7:1600419..1600429,-#_8f23c9c6d1cc427d1de945feab9d9e3fp11@TMEM184A
3.16e-29FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_8f23c9c6d1cc427d1de945feab9d9e3fp@chr1:19403546..19403571, -
3.16e-29FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_8f23c9c6d1cc427d1de945feab9d9e3fp@chr1:19403546..19403571, -
3.16e-29FFCP PHASE1:Hg19::chr7:1600419..1600429,-#_8f23c9c6d1cc427d1de945feab9d9e3fp11@TMEM184A
5.61e-29FFCP PHASE1:Hg19::chr12:48164790..48164808,-#_5108f37387f8d2f34e988635bbcf4bd4p16@RAPGEF3
5.61e-29FFCP PHASE1:Hg19::chr20:43743762..43743770,-#_5108f37387f8d2f34e988635bbcf4bd4p3@WFDC5
5.61e-29FFCP PHASE2:Hg19::chr20:43743762..43743770,-#_5108f37387f8d2f34e988635bbcf4bd4p3@WFDC5
5.61e-29FFCP PHASE2:Hg19::chr12:48164790..48164808,-#_5108f37387f8d2f34e988635bbcf4bd4p16@RAPGEF3
5.56e-26FFCP PHASE2:Hg19::chr16:3014251..3014254,+#_01b817974e2e608a80337b58a22324bcp3@KREMEN2
5.56e-26FFCP PHASE1:Hg19::chr16:3014251..3014254,+#_01b817974e2e608a80337b58a22324bcp3@KREMEN2
6.73e-26FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_26bae6d614dede3e27a36439e75bc258p@chr6:35048829..35048844, +
6.73e-26FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_26bae6d614dede3e27a36439e75bc258p@chr6:35048829..35048844, +
7.14e-26FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_fe997663a01d202e6a9f51a9a35a6a68p8@HTR7
7.14e-26FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_fe997663a01d202e6a9f51a9a35a6a68p@chr6:113369869..113369877, +
7.14e-26FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_fe997663a01d202e6a9f51a9a35a6a68p16@SHC4
7.14e-26FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_fe997663a01d202e6a9f51a9a35a6a68p@chr6:113369869..113369877, +
7.14e-26FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_fe997663a01d202e6a9f51a9a35a6a68p5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_fe997663a01d202e6a9f51a9a35a6a68p16@SHC4
7.14e-26FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_fe997663a01d202e6a9f51a9a35a6a68p5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE2:Hg19::chr16:56368957..56368963,+#_fe997663a01d202e6a9f51a9a35a6a68p@chr16:56368957..56368963, +
7.14e-26FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_fe997663a01d202e6a9f51a9a35a6a68p8@HTR7
7.14e-26FFCP PHASE1:Hg19::chr16:56368957..56368963,+#_fe997663a01d202e6a9f51a9a35a6a68p@chr16:56368957..56368963, +
8.66e-26FFCP PHASE2:Hg19::chr11:67463189..67463193,-#_3c996a5c8d85f7e0735e03d53e510a03p@chr11:67463189..67463193, -
8.66e-26FFCP PHASE1:Hg19::chr11:67463189..67463193,-#_3c996a5c8d85f7e0735e03d53e510a03p@chr11:67463189..67463193, -
1.0e-22FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_87458f44abe77ab1f0f2f5b202ae7332p@chr12:46897588..46897603, +
1.0e-22FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_87458f44abe77ab1f0f2f5b202ae7332p@chr12:46897588..46897603, +
1.12e-22FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_db010e3a5cb3c1a95d4dc85cdfc7dc8dp@chr13:20934450..20934456, +
1.12e-22FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_db010e3a5cb3c1a95d4dc85cdfc7dc8dp@chr13:20934450..20934456, +
1.25e-22FFCP PHASE2:Hg19::chr19:51538096..51538109,-#_557d80c8d033a92e33b865eca9114fcep5@KLK12
1.25e-22FFCP PHASE1:Hg19::chr19:51538096..51538109,-#_557d80c8d033a92e33b865eca9114fcep5@KLK12
5.17e-21FFCP PHASE1:Hg19::chr10:5529595..5529606,-#_df7121fd134889f7c012338870a76a98p@chr10:5529595..5529606, -
5.17e-21FFCP PHASE2:Hg19::chr10:5529595..5529606,-#_df7121fd134889f7c012338870a76a98p@chr10:5529595..5529606, -
7.74e-21FFCP PHASE1:Hg19::chr19:1249729..1249741,+#_9540e9b5944271ed59f9a696e93a2169p19@MIDN
7.74e-21FFCP PHASE2:Hg19::chr19:1249729..1249741,+#_9540e9b5944271ed59f9a696e93a2169p19@MIDN
1.15e-20FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_f5e0c41850a63ce954dc299fdfd853b8p@chr2:131669803..131669810, +
1.15e-20FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_f5e0c41850a63ce954dc299fdfd853b8p@chr2:131669803..131669810, +
1.28e-20FFCP PHASE1:Hg19::chr9:127212697..127212708,+#_216d5ce34ff735145f2ab2c0a7ee614dp@chr9:127212697..127212708, +
1.28e-20FFCP PHASE2:Hg19::chr9:127212697..127212708,+#_216d5ce34ff735145f2ab2c0a7ee614dp@chr9:127212697..127212708, +
1.56e-20FFCP PHASE2:Hg19::chr19:1905001..1905006,+#_02c2c1df568aa178cf011ac22dae86e6p11@SCAMP4
1.56e-20FFCP PHASE1:Hg19::chr19:1905001..1905006,+#_02c2c1df568aa178cf011ac22dae86e6p11@SCAMP4
1.9e-20FFCP PHASE1:Hg19::chr19:50709335..50709346,+#_bad3117b335a53ddce5fe305f227bff1p@chr19:50709335..50709346, +
1.9e-20FFCP PHASE1:Hg19::chr15:72490099..72490109,-#_bad3117b335a53ddce5fe305f227bff1p3@GRAMD2
1.9e-20FFCP PHASE2:Hg19::chr19:50709335..50709346,+#_bad3117b335a53ddce5fe305f227bff1p@chr19:50709335..50709346, +
1.9e-20FFCP PHASE2:Hg19::chr15:72490099..72490109,-#_bad3117b335a53ddce5fe305f227bff1p3@GRAMD2
2.76e-19FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_2444bfb0ee94b574e11ed3e460f70785p@chr20:25176603..25176614, +
2.76e-19FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_2444bfb0ee94b574e11ed3e460f70785p@chr20:25176603..25176614, +
6.77e-19FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_663043a4addc6660369b701a6c2a6c35p7@LYPD5
6.77e-19FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_663043a4addc6660369b701a6c2a6c35p7@LYPD5
8.88e-19FFCP PHASE1:Hg19::chr2:28853455..28853476,+#_768e234740273ecc7cdbf1b554e3fa97p@chr2:28853455..28853476, +
8.88e-19FFCP PHASE2:Hg19::chr2:28853455..28853476,+#_768e234740273ecc7cdbf1b554e3fa97p@chr2:28853455..28853476, +
9.72e-19FFCP PHASE1:Hg19::chr20:42816206..42816211,-#_ec7804903ceac1c4cb4d250de0ea7ac7p8@JPH2
9.72e-19FFCP PHASE1:Hg19::chr19:51538121..51538134,-#_ec7804903ceac1c4cb4d250de0ea7ac7p4@KLK12
9.72e-19FFCP PHASE2:Hg19::chr20:42816206..42816211,-#_ec7804903ceac1c4cb4d250de0ea7ac7p8@JPH2
9.72e-19FFCP PHASE2:Hg19::chr19:51538121..51538134,-#_ec7804903ceac1c4cb4d250de0ea7ac7p4@KLK12
8.69e-18FFCP PHASE1:Hg19::chr5:59064162..59064173,-#_605b0d954d2d822e0f68f18131ab4815p72@PDE4D
8.69e-18FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_605b0d954d2d822e0f68f18131ab4815p10@ERI3
8.69e-18FFCP PHASE2:Hg19::chr5:59064162..59064173,-#_605b0d954d2d822e0f68f18131ab4815p72@PDE4D
8.69e-18FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_605b0d954d2d822e0f68f18131ab4815p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_605b0d954d2d822e0f68f18131ab4815p10@ERI3
8.69e-18FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_605b0d954d2d822e0f68f18131ab4815p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_605b0d954d2d822e0f68f18131ab4815p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_605b0d954d2d822e0f68f18131ab4815p@chr3:124535316..124535340, +
8.69e-18FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_605b0d954d2d822e0f68f18131ab4815p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_605b0d954d2d822e0f68f18131ab4815p@chr3:124535316..124535340, +
1.03e-17FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_a067e7105d549f51ae0306b9ea798844p4@POMC
1.03e-17FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_a067e7105d549f51ae0306b9ea798844p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_a067e7105d549f51ae0306b9ea798844p4@POMC
1.03e-17FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_a067e7105d549f51ae0306b9ea798844p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_a067e7105d549f51ae0306b9ea798844p2@ENST00000560068
1.03e-17FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_a067e7105d549f51ae0306b9ea798844p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_a067e7105d549f51ae0306b9ea798844p19@MALAT1
1.03e-17FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_a067e7105d549f51ae0306b9ea798844p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_a067e7105d549f51ae0306b9ea798844p14@CTNNBIP1
1.03e-17FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_a067e7105d549f51ae0306b9ea798844p2@ENST00000560068
1.03e-17FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_a067e7105d549f51ae0306b9ea798844p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_a067e7105d549f51ae0306b9ea798844p19@MALAT1
1.03e-17FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_a067e7105d549f51ae0306b9ea798844p14@CTNNBIP1
1.03e-17FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_a067e7105d549f51ae0306b9ea798844p@chr5:79375654..79375674, +
2.59e-17FFCP PHASE2:Hg19::chr11:119039069..119039081,+#_592cef9f21ed3006a2647ec609cee4a5p9@NLRX1
2.59e-17FFCP PHASE1:Hg19::chr11:119039069..119039081,+#_592cef9f21ed3006a2647ec609cee4a5p9@NLRX1
2.09e-16FFCP PHASE1:Hg19::chr12:48164812..48164829,-#_976490f31efed106666f62ba656ede0fp14@RAPGEF3
2.09e-16FFCP PHASE2:Hg19::chr12:48164812..48164829,-#_976490f31efed106666f62ba656ede0fp14@RAPGEF3
2.64e-16FFCP PHASE2:Hg19::chr2:131669791..131669801,+#_bffbc0e27f184a597b538f32aa5cfb5dp@chr2:131669791..131669801, +
2.64e-16FFCP PHASE1:Hg19::chr2:131669791..131669801,+#_bffbc0e27f184a597b538f32aa5cfb5dp@chr2:131669791..131669801, +
3.32e-16FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_5874ea8cd00d16435bd7fa6a5ae82d9ep@chr17:39742822..39742850, +
3.32e-16FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_5874ea8cd00d16435bd7fa6a5ae82d9ep@chr17:39742822..39742850, +
3.59e-16FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_16aa29c1dd43f411c6a540ae74803674p@chr1:3591362..3591369, -
3.59e-16FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_16aa29c1dd43f411c6a540ae74803674p@chr1:3591362..3591369, -

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