UBERON:0004458: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0004458
|name=body cavity or lining
|namespace=
|def=
|xref=MA:0000005
|is_a=UBERON:0001062
|synonym=
|comment=
|alt_id=
|disjoint_from=
|union_...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004458 | |||
|is_a=UBERON:0001062 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=body cavity or lining | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|subset= | |||
|synonym= | |||
|union_of=UBERON:0002323;;UBERON:0004457 | |||
|xref=EMAPA:16060;;MA:0000005 | |||
}} | }} | ||
Latest revision as of 17:46, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001062(anatomical entity) |
|---|---|
| union_of: | UBERON:0002323(body cavity),UBERON:0004457(cavity lining) |
Children
| is a: | UBERON:0002323 (body cavity),UBERON:0004457 (cavity lining) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10011-101C2 (bladder, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10096-102C6 (testis, adult, pool2)
- 10198-103E9 (gall bladder, adult)
- 10201-103F3 (seminal vesicle, adult)
... further results Mouse (Mus musculus)
- 10011-101C2 (bladder, adult, pool1)
- 10020-101D2 (ovary, adult, pool1)
- 10025-101D7 (spleen, adult, pool1)
- 10026-101D8 (testis, adult, pool1)
- 10044-101F8 (spleen, fetal, pool1)
- 10049-101G4 (pancreas, adult, donor1)
- 10095-102C5
- 10096-102C6 (testis, adult, pool2)
- 10198-103E9 (gall bladder, adult)
- 10201-103F3 (seminal vesicle, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004458 (body cavity or lining), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
