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{{UBERON
{{UBERON
|id=UBERON:0004710
|alt_id=UBERON:0009875
|name=limb/fin of anterior region of body
|comment=
|namespace=
|def="A limb/fin that is part of an anterior region of body [Obol]." [OBOL:automatic]
|xref=
|is_a=UBERON:0004708
|synonym="forelimb/pectoral fin" EXACT [UBERON:cjm]
|comment=TODO - as defined, this includes ALL paired fins in the anterior region
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues." [VSAO:0000150-modified]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0005419
|develops_from=UBERON:0005419
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004710
|is_a=UBERON:0004708
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000153
|name=pectoral appendage
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0010708
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="anterior limb/fin" EXACT [UBERON:cjm];;"anterior paired appendage" EXACT [VSAO:0000148];;"forelimb or pectoral fin" EXACT [UBERON:cjm];;"forelimb/pectoral fin" EXACT [UBERON:cjm];;"pectoral limb/fin" EXACT [UBERON:cjm]
|union_of=
|xref=VSAO:0000125
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:pectoral appendage
Namespace:FANTOM
Definition:"Paired appendage that consists of the anterior appendicular skeleton and associated soft and hard tissues, but excludes the pectoral girdle and its associated soft and hard tissues." [VSAO:0000150-modified]
Xrefs:
links:
VSAO:0000125
Synonyms: "anterior limb/fin" EXACT [UBERON:cjm]
"anterior paired appendage" EXACT [VSAO:0000148]
"forelimb or pectoral fin" EXACT [UBERON:cjm]
"forelimb/pectoral fin" EXACT [UBERON:cjm]
"pectoral limb/fin" EXACT [UBERON:cjm]
Alt_id: UBERON:0009875

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004708(paired limb/fin)
develops_from:UBERON:0005419(pectoral appendage bud)
part_of:UBERON:0010708(pectoral complex)



Children

is a:UBERON:0002102 (forelimb)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004710 (pectoral appendage), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.33e-86FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_f3fc1278997ff05820f8c284bbf48e31p5@Evx2
1.33e-86FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_f3fc1278997ff05820f8c284bbf48e31p5@Evx2
2.4e-74FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_a9b75534f9f02807e43edc645c410f7dp@chr2:165983686..165983720, -
2.4e-74FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_a9b75534f9f02807e43edc645c410f7dp@chr5:120256413..120256428, -
2.4e-74FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_a9b75534f9f02807e43edc645c410f7dp@chr15:51484092..51484121, -
2.4e-74FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_a9b75534f9f02807e43edc645c410f7dp@chr5:120256413..120256428, -
2.4e-74FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_a9b75534f9f02807e43edc645c410f7dp@chr15:51484092..51484121, -
2.4e-74FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_a9b75534f9f02807e43edc645c410f7dp@chr2:165983686..165983720, -
1.21e-61FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_e12ad67bd979ced8661128306238dc70p@chr2:74505324..74505330, +
1.21e-61FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_e12ad67bd979ced8661128306238dc70p@chr2:74505324..74505330, +
2.24e-61FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_1dadfcb38e3ddcd5439899bde52f0b7bp1@Hoxd13
2.24e-61FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_1dadfcb38e3ddcd5439899bde52f0b7bp1@Hoxd13
3.63e-52FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_38ca264bf3b6ff421da3b30ce082c2c2p2@Hoxd12
3.63e-52FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_38ca264bf3b6ff421da3b30ce082c2c2p2@Hoxd12
4.62e-52FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_e9ecad09dace762a5be2569f720fb0f2p4@Evx2
4.62e-52FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_e9ecad09dace762a5be2569f720fb0f2p4@Evx2
5.88e-52FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_86eebdf14bca0b3e4fdfc4d08e2273e8p3@ENSMUST00000130532
5.88e-52FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_86eebdf14bca0b3e4fdfc4d08e2273e8p3@ENSMUST00000130532
5.28e-50FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_e2678c6ab9851c43fecf37a07bcd1090p1@ENSMUST00000136302
5.28e-50FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_e2678c6ab9851c43fecf37a07bcd1090p1@ENSMUST00000136302
9.21e-50FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_d396aca56a7256050d8b85bc4b41bc0dp@chr6:51009701..51009744, -
9.21e-50FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_d396aca56a7256050d8b85bc4b41bc0dp@chr6:51009701..51009744, -
2.92e-48FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_932b4a69adc874765a5fdf22ba2d47f4p5@Kera
2.92e-48FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_932b4a69adc874765a5fdf22ba2d47f4p5@Kera
4.71e-48FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_0e1141fe827992c0324626ea752f05dfp2@Hoxa13
4.71e-48FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_0e1141fe827992c0324626ea752f05dfp2@Hoxa13
6.47e-48FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_f1d3d07ca67af58a397fc761d840be72p@chr2:74513149..74513159, +
6.47e-48FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_f1d3d07ca67af58a397fc761d840be72p@chr2:74513149..74513159, +
1.4e-44FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_1ba3bee15d028014d34f0691fec59225p@chr1:165288513..165288518, +
1.4e-44FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_1ba3bee15d028014d34f0691fec59225p@chr1:165288513..165288518, +
2.07e-41FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_5ca58aba4032cc11b5042bc2d9c4e285p3@Dnm3
2.07e-41FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_5ca58aba4032cc11b5042bc2d9c4e285p3@Dnm3
2.91e-40FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_0cb7eec00aa54ff2bf8725c25bdc41a0p1@ENSMUST00000130532
2.91e-40FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_0cb7eec00aa54ff2bf8725c25bdc41a0p1@ENSMUST00000130532
3.67e-40FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_8cba2b82c1bd806b5c45ef63490f376ap4@ENSMUST00000130532
3.67e-40FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_8cba2b82c1bd806b5c45ef63490f376ap4@ENSMUST00000130532
5.46e-39FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_d279868b896f1a01c9147ad26f572dbfp3@Hoxa11as
5.46e-39FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_d279868b896f1a01c9147ad26f572dbfp3@Hoxa11as
6.59e-38FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_403aee2ce6660f176d38181b3bdfbad4p@chr2:74512009..74512012, +
6.59e-38FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_403aee2ce6660f176d38181b3bdfbad4p@chr2:74512009..74512012, +
1.94e-35FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_626dde70e54a76aa3893d64c5764154ap3@ENSMUST00000147294, p3@uc008jia.1
1.94e-35FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_626dde70e54a76aa3893d64c5764154ap3@ENSMUST00000147294, p3@uc008jia.1
9.74e-35FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_f5692006ae3ffb7b217308f85be26d50p6@Hapln1
9.74e-35FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_f5692006ae3ffb7b217308f85be26d50p6@Hapln1
2.95e-34FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_42700e223f58814c1ba00e2912fc0209p3@Acpl2
2.95e-34FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_42700e223f58814c1ba00e2912fc0209p3@Acpl2
6.28e-34FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_0c26bafdaca3a1a6e23df6326a5129aap1@Dkk4
6.28e-34FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_0c26bafdaca3a1a6e23df6326a5129aap1@Dkk4
7.62e-34FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_351817ad6d439a8d4b04baccf4d6b93bp2@Gdf5
7.62e-34FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_351817ad6d439a8d4b04baccf4d6b93bp2@Gdf5
2.0e-33FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_411ea2324cc943fb3d39205b3e983ee4p@chr18:80910310..80910329, -
2.0e-33FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_411ea2324cc943fb3d39205b3e983ee4p@chr18:80910310..80910329, -
1.89e-32FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_9509b0c207badfca9da1bacfde24f530p1@Hoxa13
1.89e-32FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_9509b0c207badfca9da1bacfde24f530p1@Hoxa13
6.43e-32FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_f6fa0fe8b7bc1f591049ac6032a46746p@chr2:33498116..33498124, +
6.43e-32FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_f6fa0fe8b7bc1f591049ac6032a46746p@chr2:33498116..33498124, +
7.44e-32FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_88ad38bee480798929a12c22eb216c48p4@ENSMUST00000152118, p4@uc008jhz.1
7.44e-32FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_88ad38bee480798929a12c22eb216c48p4@ENSMUST00000152118, p4@uc008jhz.1
1.09e-30FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_2e1103999324d0e55e16fdc9a0d8c82ap6@Hoxd11
1.09e-30FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_2e1103999324d0e55e16fdc9a0d8c82ap6@Hoxd11
2.22e-30FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_4194588808742fc230fe86cea638eaa6p@chr12:34649201..34649205, +
2.22e-30FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_4194588808742fc230fe86cea638eaa6p@chr12:34649201..34649205, +
1.6e-29FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_854b1406e1531f3506f0e0c0c63bd6b5p5@Tbx5
1.6e-29FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_854b1406e1531f3506f0e0c0c63bd6b5p5@Tbx5
4.13e-29FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_1eb0ffc0cdf62d1e74395052bd865500p@chr5:120246556..120246565, +
4.13e-29FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_1eb0ffc0cdf62d1e74395052bd865500p@chr5:120246556..120246565, +
4.91e-29FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_6b060c45e62b1f1181b63eceee8d34b4p@chr5:120246522..120246553, +
4.91e-29FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_6b060c45e62b1f1181b63eceee8d34b4p@chr5:120246522..120246553, +
5.59e-29FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_a2d104b13fc030e718e1b449e7defd64p14@2810055G20Rik
5.59e-29FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_a2d104b13fc030e718e1b449e7defd64p14@2810055G20Rik
8.27e-29FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_e8caa4056c8ea296e1a0fddc8753f789p23@Mecom
8.27e-29FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_e8caa4056c8ea296e1a0fddc8753f789p23@Mecom
6.5e-28FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_a5076fab33eb5de42bf0eb259aba27fap8@Tbx15
6.5e-28FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_a5076fab33eb5de42bf0eb259aba27fap8@Tbx15
3.95e-27FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_6a8e429ab5d7225540ed648bdda31781p@chr15:97807283..97807309, -
3.95e-27FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_6a8e429ab5d7225540ed648bdda31781p@chr15:97807283..97807309, -
5.23e-27FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_83f04a7f05e15f7f04eaed347182e974p8@Prrx1
5.23e-27FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_83f04a7f05e15f7f04eaed347182e974p8@Prrx1
1.4e-26FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_1525b295f1429b026d61a44dc5d97e17p2@Nkx3-2
1.4e-26FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_1525b295f1429b026d61a44dc5d97e17p2@Nkx3-2
1.64e-26FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_e3b4fc4f43df36fcb1376753c233de0fp@chr16:95807232..95807250, -
1.64e-26FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_e3b4fc4f43df36fcb1376753c233de0fp@chr16:95807232..95807250, -
7.57e-26FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_a6ebdaa5b9d155c657c9eb060b3f95dfp@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_a6ebdaa5b9d155c657c9eb060b3f95dfp@chr3:37606335..37606337, -
7.57e-26FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_a6ebdaa5b9d155c657c9eb060b3f95dfp@chr3:37606335..37606337, -
7.57e-26FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_a6ebdaa5b9d155c657c9eb060b3f95dfp@chr3:86116124..86116132, +
7.57e-26FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_a6ebdaa5b9d155c657c9eb060b3f95dfp@chr4:125973415..125973418, +
7.57e-26FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_a6ebdaa5b9d155c657c9eb060b3f95dfp@chr3:86116124..86116132, +
1.07e-25FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_0de285f8539d4db722a016b35fd48b23p5@Arhgap28
1.07e-25FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_0de285f8539d4db722a016b35fd48b23p5@Arhgap28
2.33e-25FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_0b2109215d94941453f538911fbf83d5p9@Igf1r
2.33e-25FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_0b2109215d94941453f538911fbf83d5p9@Igf1r
2.93e-25FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_ab274cb5e76ac2f9dd228247ef9cef4dp@chr15:101936581..101936594, +
2.93e-25FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_ab274cb5e76ac2f9dd228247ef9cef4dp@chr15:101936581..101936594, +
2.99e-25FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_0c06fd019dc1ec668289e1e4ee1a81a7p@chr17:23882313..23882330, -
2.99e-25FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_0c06fd019dc1ec668289e1e4ee1a81a7p@chr17:23882313..23882330, -
3.52e-25FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_815cd831244990681426dffe5a9ca7a5p1@Gdf5
3.52e-25FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_815cd831244990681426dffe5a9ca7a5p1@Gdf5
2.77e-24FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_c0856858325b84109e4826767256b003p16@Rbfox2
2.77e-24FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_c0856858325b84109e4826767256b003p16@Rbfox2

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