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{{UBERON
{{UBERON
|id=UBERON:0005297
|alt_id=
|name=testis sex cord
|namespace=
|def="The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
|xref=EHDAA2:0002011;;EHDAA:8152;;EMAPA:29098;;VHOG:0001321
|is_a=UBERON:0004910;;UBERON:0005295
|synonym="primary sex cord" RELATED [];;"testis cord" EXACT [MP:0006424];;"testis primary sex cords" EXACT [EHDAA2:0002011];;"testis primitive sex cord" RELATED []
|comment=check primary vs testis
|comment=check primary vs testis
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0010141
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005297
|is_a=UBERON:0004910 ;;UBERON:0005295
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=testis sex cord
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000473
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="primary sex cord" RELATED [];;"testis cord" EXACT [MP:0006424];;"testis primary sex cords" EXACT [EHDAA2:0002011];;"testis primitive sex cord" RELATED []
|union_of=
|xref=EHDAA2:0002011;;EHDAA:8152;;EMAPA:29098;;VHOG:0001321
}}
}}

Latest revision as of 17:52, 12 September 2014

Name:testis sex cord
Namespace:FANTOM
Definition:"The testis cords are precursors to the rete testis. They play several different roles in the development of the male genitals[WP]." [Wikipedia:Testis_cords]
Xrefs:
links:

EHDAA2:0002011
EHDAA:8152
EMAPA:29098

VHOG:0001321
Synonyms: "primary sex cord" RELATED []
"testis cord" EXACT [MP:0006424]
"testis primary sex cords" EXACT [EHDAA2:0002011]
"testis primitive sex cord" RELATED []
Comments:check primary vs testis

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004910(epithelium of male gonad),UBERON:0005295(sex cord)
develops_from:UBERON:0010141(primitive sex cord of indifferent gonad)
part_of:UBERON:0000473(testis)



Children

develops from:UBERON:0001343 (seminiferous tubule of testis)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005297 (testis sex cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data