UBERON:0005721: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment=the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney | |comment=the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from=UBERON:0007297 | |develops_from=UBERON:0007297 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0005721 | |||
|is_a=UBERON:0000926 ;;UBERON:0004120 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=pronephric mesoderm | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0003064 | |part_of=UBERON:0003064 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO]" xsd:string | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO]" xsd:string | ||
| | |subset= | ||
| | |synonym="pronephric anlage" RELATED [XAO:0000264];;"pronephric bulge" RELATED [XAO:0000264];;"pronephric mesenchyme" RELATED [XAO:0000264];;"pronephric primordium" RELATED [XAO:0000264] | ||
|union_of= | |||
|xref=AAO:0011090;;EFO:0003479;;TAO:0000067;;VHOG:0001239;;XAO:0000264;;ZFA:0000067 | |||
}} | }} | ||
Latest revision as of 17:54, 12 September 2014
| Name: | pronephric mesoderm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Xrefs: |
| ||
| Synonyms: |
"pronephric anlage" RELATED [XAO:0000264] "pronephric bulge" RELATED [XAO:0000264] "pronephric mesenchyme" RELATED [XAO:0000264] "pronephric primordium" RELATED [XAO:0000264] | ||
| Comments: | the intermediate mesoderm of the chick embryo acquires its ability to form kidneys through its interactions with the paraxial mesoderm [ISBN:9780878932504 "Developmental Biology", PMID:10720431 "Signals from trunk paraxial mesoderm induce pronephros formation in chick intermediate mesoderm"]. These interactions induce the expression of TFs including Lim1, Pax2 and Pax6 that cause the intermediate mesoderm to form the kidney |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000926(mesoderm),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0007297(presumptive pronephric mesoderm) |
| part_of: | UBERON:0003064(intermediate mesoderm) |
Children
| develops from: | UBERON:0002120 (pronephros),UBERON:0003060 (pronephric duct) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005721 (pronephric mesoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE2:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 2.83e-65 | FFCP PHASE1:Mm9::chr10:127470655..127470664,+#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr10:127470655..127470664, + |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63585028..63585037,-#_5b4f10e1e871e010ff8b4325fc13cddc | p@chr14:63585028..63585037, - |
| 2.83e-65 | FFCP PHASE1:Mm9::chr14:63665679..63665688,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Defb42 |
| 2.83e-65 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_5b4f10e1e871e010ff8b4325fc13cddc | p4@Spink12 |
| 3.99e-50 | FFCP PHASE2:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 3.99e-50 | FFCP PHASE1:Mm9::chr2:152388713..152388729,+#_68c9c90a59166e7c7e8ce48d580d375c | p@chr2:152388713..152388729, + |
| 5.6e-50 | FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 5.6e-50 | FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_1b592bcb80aaa8c83d159ca2476524ae | p@chr2:120409486..120409492, + |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585020..63585025,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585020..63585025, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr9:35597686..35597691,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p2@D730048I06Rik, p2@Gm17727 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr14:63585048..63585062,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr14:63585048..63585062, - |
| 1.6e-49 | FFCP PHASE2:Mm9::chr11:105797641..105797656,-#_f665ec65cf1dea324fcbc7a9bfae1e95 | p4@Cyb561 |
| 1.6e-49 | FFCP PHASE1:Mm9::chr11:76361451..76361499,+#_f665ec65cf1dea324fcbc7a9bfae1e95 | p@chr11:76361451..76361499, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr14:51734043..51734054,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p2@Eddm3b |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE2:Mm9::chr9:26732045..26732085,+#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26732045..26732085, + |
| 2.33e-49 | FFCP PHASE1:Mm9::chr9:26611246..26611253,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr9:26611246..26611253, - |
| 2.33e-49 | FFCP PHASE1:Mm9::chr14:63627556..63627564,-#_5c9c897ce680f33de396c5ef1c1a8ca6 | p@chr14:63627556..63627564, - |
| 3.4e-49 | FFCP PHASE2:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 3.4e-49 | FFCP PHASE1:Mm9::chr2:69981027..69981032,+#_a87d0bddc857d252f012012cedd7c844 | p@chr2:69981027..69981032, + |
| 9.75e-45 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr14:68644730..68644737,+#_79579161d4c4b30afc39427ef7e168db | p@chr14:68644730..68644737, + |
| 9.75e-45 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_79579161d4c4b30afc39427ef7e168db | p10@PAX2 |
| 9.75e-45 | FFCP PHASE2:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 9.75e-45 | FFCP PHASE1:Hg19::chr1:172416185..172416189,-#_79579161d4c4b30afc39427ef7e168db | p@chr1:172416185..172416189, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:17224952..17224968,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:17224952..17224968, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr4:138824620..138824627,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr4:138824620..138824627, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:110131571..110131579,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p15@Wars |
| 4.54e-44 | FFCP PHASE2:Mm9::chr8:25706249..25706254,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:25706249..25706254, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379430..21379437,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379430..21379437, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:103276578..103276585,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:103276578..103276585, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:54678902..54678911,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:54678902..54678911, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr7:151928014..151928021,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr7:151928014..151928021, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:156776465..156776473,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:156776465..156776473, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:35651650..35651673,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@9230110F15Rik |
| 4.54e-44 | FFCP PHASE1:Mm9::chr15:54678983..54678995,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:54678983..54678995, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:20817297..20817313,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:20817297..20817313, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:110773718..110773729,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:110773718..110773729, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr15:75329148..75329155,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr15:75329148..75329155, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:22061721..22061728,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p2@Gm6040, p2@LOC100503992 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:26688157..26688159,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26688157..26688159, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr2:25678985..25679033,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:25678985..25679033, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:52101299..52101305,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:52101299..52101305, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:87922962..87922982,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:87922962..87922982, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51670340..51670346,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:51670340..51670346, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:90155722..90155743,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:90155722..90155743, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21378927..21378932,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21378927..21378932, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@Ntsr2 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:164434157..164434162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr2:164434157..164434162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr10:28772042..28772046,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:28772042..28772046, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:52712744..52712754,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:52712744..52712754, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr12:114385720..114385732,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr12:114385720..114385732, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr16:22504758..22504766,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:22504758..22504766, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr11:101958844..101958851,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:101958844..101958851, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:22547027..22547063,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:22547027..22547063, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379306..21379315,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379306..21379315, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:75798157..75798162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:75798157..75798162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chrX:130496372..130496393,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496372..130496393, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr6:18338054..18338077,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr6:18338054..18338077, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p6@Defb20 |
| 4.54e-44 | FFCP PHASE1:Mm9::chr1:36016859..36016897,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:36016859..36016897, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr16:23308182..23308185,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr16:23308182..23308185, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr8:19141471..19141518,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr8:19141471..19141518, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr5:31379437..31379448,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379437..31379448, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:77645280..77645295,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:77645280..77645295, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr14:51627586..51627595,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Rnase10 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr3:65253465..65253475,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr3:65253465..65253475, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:52542831..52542836,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p4@Rnase13 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr1:89597818..89597827,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr1:89597818..89597827, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:98567868..98567884,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p5@Med24 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:31379477..31379481,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:31379477..31379481, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr17:24865194..24865204,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr17:24865194..24865204, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21385729..21385768,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21385729..21385768, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:50280126..50280140,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:50280126..50280140, + |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:116901629..116901639,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p3@uc007mmw.1 |
| 4.54e-44 | FFCP PHASE2:Mm9::chr13:21379159..21379162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379159..21379162, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:70761885..70761895,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:70761885..70761895, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr9:26704579..26704582,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr9:26704579..26704582, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:103837894..103837900,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:103837894..103837900, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:75798157..75798162,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:75798157..75798162, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr9:42151966..42151976,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p9@Tecta |
| 4.54e-44 | FFCP PHASE1:Mm9::chrX:130496372..130496393,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chrX:130496372..130496393, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr11:96150839..96150842,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr11:96150839..96150842, - |
| 4.54e-44 | FFCP PHASE2:Mm9::chr5:35930706..35930717,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr5:35930706..35930717, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr14:51680551..51680555,-#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr14:51680551..51680555, - |
| 4.54e-44 | FFCP PHASE1:Mm9::chr13:21379107..21379136,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr13:21379107..21379136, + |
| 4.54e-44 | FFCP PHASE1:Mm9::chr10:56515486..56515496,+#_a36a387a3a10bbdf54775f8b8ef579b0 | p@chr10:56515486..56515496, + |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Portion of tissue that consists of the mesenchymal precursor to the pronephric kidney and that begins to separate from the intermediate mesoderm at NF stage 21 and epithelializes by NF stage 30.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
