UBERON:0006555: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0006555 | |||
|is_a=UBERON:0000025 ;;UBERON:0006554 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=excretory tube | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001008 | |part_of=UBERON:0001008 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref= | |||
}} | }} | ||
Latest revision as of 17:57, 12 September 2014
| Name: | excretory tube |
|---|---|
| Namespace: | FANTOM |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000025(tube),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| is a: | UBERON:0000056 (ureter),UBERON:0000083 (mesonephric tubule),UBERON:0006553 (renal duct),UBERON:0007684 (uriniferous tubule),UBERON:0009773 (renal tubule),UBERON:0010532 (primitive nephron) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10290-104G2
- 10318-105A3
- 10346-105D4
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11517-119H5 (Renal Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006555 (excretory tube), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.12e-98 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_e3592ada75472de93964bc8b01718aa4 | p@chr2:693380..693398, + |
| 7.12e-98 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_e3592ada75472de93964bc8b01718aa4 | p@chr2:693380..693398, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_3b2bf352079d1a022ce1c9522b9b5110 | p4@Spink12 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_3b2bf352079d1a022ce1c9522b9b5110 | p4@Spink12 |
| 2.81e-78 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_625bd56ad734e385381b843cd2fe98ca | p4@MEGF11 |
| 2.81e-78 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_625bd56ad734e385381b843cd2fe98ca | p4@MEGF11 |
| 1.04e-71 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_15c0338b883399fdbd8f506c24c999cd | p4@PAX2 |
| 1.04e-71 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_15c0338b883399fdbd8f506c24c999cd | p4@PAX2 |
| 1.28e-69 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_5ac4ac0a461e2936ec059f1e2e5ba1e5 | p7@HOXA10 |
| 1.28e-69 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_5ac4ac0a461e2936ec059f1e2e5ba1e5 | p7@HOXA10 |
| 4.01e-67 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_e980f55b99064a2466be6bc8d5320394 | p3@PAX2 |
| 4.01e-67 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_e980f55b99064a2466be6bc8d5320394 | p3@PAX2 |
| 1.1e-61 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_87bca8656149280ac9f661fa29378448 | p@chr1:1100457..1100470, + |
| 1.1e-61 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_87bca8656149280ac9f661fa29378448 | p@chr1:1100457..1100470, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr16:25752183..25752203,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr16:25752183..25752203, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p3@Ntsr2 |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:164787162..164787188,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chrX:164787162..164787188, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:53955299..53955306,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr11:53955299..53955306, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr16:22547027..22547063,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr16:22547027..22547063, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:18213651..18213663,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p1@Defb44-ps |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:51627586..51627595,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p4@Rnase10 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:96014490..96014496,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr8:96014490..96014496, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr4:137325863..137325870,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p15@Alpl |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:51676936..51676963,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p6@Rnase12 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr13:21379107..21379136,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr13:21379107..21379136, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr15:83143938..83143953,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr15:83143938..83143953, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:101958844..101958851,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr11:101958844..101958851, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chrX:130496260..130496269, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:26611214..26611227,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr9:26611214..26611227, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:89596972..89596981,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr1:89596972..89596981, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:89597660..89597668,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr1:89597660..89597668, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:110131571..110131579,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p15@Wars |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:28772042..28772046,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr10:28772042..28772046, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:11079838..11079844,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr1:11079838..11079844, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:164480465..164480471,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p2@Wfdc9 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:96140694..96140720,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr11:96140694..96140720, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:160573065..160573077,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr2:160573065..160573077, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:69143309..69143319,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr14:69143309..69143319, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:52101299..52101305,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr10:52101299..52101305, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:110773731..110773753,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr5:110773731..110773753, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:116901540..116901549,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p4@uc007mmw.1 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr4:123977104..123977120,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p1@ENSMUST00000139012, p1@uc008uqo.1 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr4:150092027..150092070,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr4:150092027..150092070, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:152302836..152302841,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p6@Defb20 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:105313229..105313234,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p17@Capn5 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:31379486..31379501,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr5:31379486..31379501, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr15:75329148..75329155,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr15:75329148..75329155, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:26610184..26610191,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p4@Glb1l2 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr7:148445639..148445665,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr7:148445639..148445665, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:10488683..10488691,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chrX:10488683..10488691, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:51680551..51680555,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr14:51680551..51680555, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr4:40010825..40010844,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr4:40010825..40010844, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:21381141..21381155,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr13:21381141..21381155, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:12571771..12571780,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chrX:12571771..12571780, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr15:54678915..54678922,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr15:54678915..54678922, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:31379454..31379466,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr5:31379454..31379466, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:25349414..25349424,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p5@Lcn12 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr17:73221034..73221051,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr17:73221034..73221051, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:52712744..52712754,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr13:52712744..52712754, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:22061721..22061728,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p2@Gm6040, p2@LOC100503992 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr1:90156002..90156013,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr1:90156002..90156013, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:25706083..25706089,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p4@Ido1 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr7:56772735..56772741,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr7:56772735..56772741, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr18:44264128..44264135,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p5@Spink12 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:101958855..101958871,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr11:101958855..101958871, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:35715997..35716008,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p1@9230113P08Rik |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:59845404..59845416,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr11:59845404..59845416, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:70761885..70761895,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr9:70761885..70761895, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr14:51676936..51676963,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p6@Rnase12 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr19:17585885..17585901,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr19:17585885..17585901, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:52542711..52542716,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p2@Rnase13 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr13:21380610..21380620,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr13:21380610..21380620, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr9:35657557..35657582,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p2@Gm3428 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr12:103896102..103896116,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr12:103896102..103896116, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:21385325..21385329,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr13:21385325..21385329, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:19141447..19141469,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr8:19141447..19141469, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chrX:156776465..156776473,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chrX:156776465..156776473, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr15:75304916..75304925,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr15:75304916..75304925, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:158083973..158083982,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p3@Bpi |
| 3.28e-58 | FFCP PHASE1:Mm9::chr1:90368977..90368987,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr1:90368977..90368987, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr14:66521865..66521876,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr14:66521865..66521876, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:22061771..22061777,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p3@Gm6040, p3@LOC100503992 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr12:16663110..16663116,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p3@Ntsr2 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr16:28323634..28323657,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr16:28323634..28323657, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chrX:50280126..50280140,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chrX:50280126..50280140, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr9:35651650..35651673,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p4@9230110F15Rik |
| 3.28e-58 | FFCP PHASE1:Mm9::chr6:54359310..54359337,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr6:54359310..54359337, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr2:164434157..164434162,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr2:164434157..164434162, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr13:21379098..21379104,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr13:21379098..21379104, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:126604677..126604701,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr8:126604677..126604701, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr3:103650817..103650825,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr3:103650817..103650825, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr12:103896102..103896116,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr12:103896102..103896116, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr11:101959159..101959163, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:19062951..19062955,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr8:19062951..19062955, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:88272459..88272484,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr5:88272459..88272484, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr16:22504758..22504766,-#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr16:22504758..22504766, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p5@Spink12 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr8:91107095..91107103,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr8:91107095..91107103, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr2:25678985..25679033,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr2:25678985..25679033, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr8:91107095..91107103,+#_84c76bf0c1e0476c0a3dd256f65943d6 | p@chr8:91107095..91107103, + |
