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{{UBERON
{{UBERON
|id=UBERON:0010042
|alt_id=
|name=1st arch mesenchyme
|namespace=
|def=
|xref=EMAPA:16128
|is_a=UBERON:0009494
|synonym="mesenchyme of 1st arch" EXACT [EMAPA:16128]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def=
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0010042
|is_a=UBERON:0009494
|is_obsolete=
|located_in=
|located_in=
|name=1st arch mesenchyme
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0004362
|part_of=UBERON:0004362
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="mesenchyme of 1st arch" EXACT [EMAPA:16128]
|union_of=
|xref=EMAPA:16128
}}
}}

Latest revision as of 18:07, 12 September 2014

Name:1st arch mesenchyme
Namespace:FANTOM
Xrefs:
links:
EMAPA:16128
Synonyms: "mesenchyme of 1st arch" EXACT [EMAPA:16128]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0009494(pharyngeal arch mesenchymal region)
part_of:UBERON:0004362(pharyngeal arch 1)



Children

is a:UBERON:0010045 (1st arch maxillary mesenchyme),UBERON:0010259 (1st arch mesenchyme from neural crest)
part of:UBERON:0010259 (1st arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010042 (1st arch mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data