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UBERON:0009494

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Name:pharyngeal arch mesenchymal region
Namespace:FANTOM
Definition:"A portion of mesenchymal tissue associated with an individual pharyngeal arch." [UBERON:cjm]
Synonyms: "branchial arch mesenchyme" EXACT [MP:0011262]
"pharyngeal arch mesenchyme" EXACT [UBERON:cjm]
Comments:Editor notes: this represents a part of the entire arch mesenchyme (UBERON:0010046), and is therefore a superclass of the individual arch mesenchyme classes. Alternate definition: primordial embryonic connective tissue associated with the branchial arches, consisting of mesenchymal cells supported in interlaminar jelly, that derive mostly from the mesoderm and contribute to facial and cranial nerve-associated structures. [MP:0011262]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005253(head mesenchyme),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0002539(pharyngeal arch),UBERON:0010046(entire pharyngeal arch associated mesenchyme)



Children

is a:UBERON:0010042 (1st arch mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009494 (pharyngeal arch mesenchymal region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data