Personal tools

UBERON:0010046

From FANTOM5_SSTAR

Jump to: navigation, search

Name:entire pharyngeal arch associated mesenchyme
Namespace:FANTOM
Definition:"The sum total of mesenchymal tissue in the pharyngeal arch region." [UBERON:cjm]
Xrefs:
links:

EHDAA2:0001459

EMAPA:16550
Synonyms: "associated mesenchyme of pharyngeal region" EXACT [EMAPA:16550]
"entire branchial arch associated mesenchyme" EXACT [UBERON:cjm]
"pharyngeal arch associated mesenchyme" EXACT [EHDAA2:0001459]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004119(endoderm-derived structure),UBERON:0005291(embryonic tissue),UBERON:0007524(dense mesenchyme tissue),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0008814(pharyngeal arch system)



Children

part of:UBERON:0009494 (pharyngeal arch mesenchymal region),UBERON:0010359 (pharyngeal arch mesenchyme from neural crest)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010046 (entire pharyngeal arch associated mesenchyme), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data