FFCP PHASE1:Hg19::chr12:47414211..47414229,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:47414211..47414229,- | |||
|coexpression_cluster_id=C397 | |||
|description=CAGE_peak_at_chr12:47414211..47414229,- | |description=CAGE_peak_at_chr12:47414211..47414229,- | ||
|id=chr12:47414211..47414229,- | |id=chr12:47414211..47414229,- | ||
|ontology_enrichment_celltype=CL:0002334!1.06e-10!12;CL:0002580!1.79e-09!3;CL:0002579!2.43e-09!3;CL:0002615!3.12e-09!3;CL:0000136!2.09e-08!15;CL:0000077!4.48e-08!19;CL:0000197!1.64e-07!6;CL:0000098!1.64e-07!6;CL:0002167!1.64e-07!6;CL:0002617!4.87e-07!2 | |ontology_enrichment_celltype=CL:0002334!1.06e-10!12;CL:0002580!1.79e-09!3;CL:0002579!2.43e-09!3;CL:0002615!3.12e-09!3;CL:0000136!2.09e-08!15;CL:0000077!4.48e-08!19;CL:0000197!1.64e-07!6;CL:0000098!1.64e-07!6;CL:0002167!1.64e-07!6;CL:0002617!4.87e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002580;8.57e-22;3!CL:0002617;1.45e-15;2!CL:0002334;1.03e-14;12!CL:0002615;1.10e-10;3!CL:0002579;1.34e-10;3!CL:0000136;3.71e-09;13!CL:0000511;6.26e-09;1!CL:0002625;6.26e-09;1!CL:0000216;6.26e-09;1!CL:0002174;8.45e-09;1!CL:0000501;8.45e-09;1!CL:0002568;1.23e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002580,8.90e-22,3;CL:0002617,1.45e-15,2;CL:0002334,9.05e-15,12;CL:0002579,1.05e-10,3;CL:0002615,1.41e-10,3;CL:0000511,6.03e-09,1;CL:0002625,6.03e-09,1;CL:0000216,6.03e-09,1;CL:0002174,8.78e-09,1;CL:0000501,8.78e-09,1;CL:0002568,1.27e-08,1;CL:0000136,6.55e-08,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.11e-22!14;DOID:193!2.57e-13!29;DOID:120!3.63e-12!27 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.03e-12;14!DOID:193;1.73e-08;29!DOID:3371;2.64e-08;1!DOID:4549;2.64e-08;1!DOID:5861;2.64e-08;1!DOID:6496;2.64e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.80e-13,14;DOID:193,1.69e-08,29;DOID:3371,3.28e-08,1;DOID:4549,3.28e-08,1;DOID:5861,3.28e-08,1;DOID:6496,3.28e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0003688!7.17e-17!6;UBERON:0002358!7.17e-17!6;UBERON:0003684!7.17e-17!6;UBERON:0001178!7.17e-17!6;UBERON:0002118!6.02e-14!5;UBERON:0004532!6.02e-14!5;UBERON:0002323!3.13e-10!46;UBERON:0000992!1.08e-09!13;UBERON:0004458!2.22e-09!49;UBERON:0004176!1.34e-08!22;UBERON:0004457!5.02e-08!12;UBERON:0000042!5.02e-08!12;UBERON:0000991!2.37e-07!21;UBERON:0009196!2.37e-07!21;UBERON:0009117!2.37e-07!21;UBERON:0005564!2.37e-07!21;UBERON:0000310!3.56e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;1.46e-19;6!UBERON:0002358;1.46e-19;6!UBERON:0003684;1.46e-19;6!UBERON:0001178;1.46e-19;6!UBERON:0000310;9.63e-18;10!UBERON:0001443;4.05e-16;11!UBERON:0004457;4.14e-13;9!UBERON:0000042;4.14e-13;9!UBERON:0001136;6.26e-09;1!UBERON:0001343;6.26e-09;1!UBERON:0004910;6.26e-09;1!UBERON:0004813;6.26e-09;1!UBERON:0001282;2.64e-08;1!UBERON:0009842;2.64e-08;1!UBERON:0003704;2.64e-08;1!UBERON:0001171;2.64e-08;1!UBERON:0001172;2.64e-08;1!UBERON:0002553;8.82e-07;52!UBERON:0002323;9.72e-07;45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.46e-19,6;UBERON:0002358,1.46e-19,6;UBERON:0003684,1.46e-19,6;UBERON:0001178,1.46e-19,6;UBERON:0000310,9.82e-18,10;UBERON:0001443,4.12e-16,11;UBERON:0002323,2.67e-11,46;UBERON:0004458,1.60e-10,49;UBERON:0004457,7.19e-10,12;UBERON:0000042,7.19e-10,12;UBERON:0003886,2.03e-09,54;UBERON:0001136,6.03e-09,1;UBERON:0001343,6.03e-09,1;UBERON:0004910,6.03e-09,1;UBERON:0005154,6.03e-09,1;UBERON:0005295,6.03e-09,1;UBERON:0004813,6.03e-09,1;UBERON:0005297,6.03e-09,1;UBERON:0005294,6.03e-09,1;UBERON:0010141,6.03e-09,1;UBERON:0005891,6.03e-09,1;UBERON:0001282,2.64e-08,1;UBERON:0009842,2.64e-08,1;UBERON:0003704,2.64e-08,1;UBERON:0001171,2.64e-08,1;UBERON:0001172,2.64e-08,1;UBERON:0002553,3.52e-08,61;UBERON:0009569,5.02e-07,112 | |||
|phase1_expression=2.18014055124668,2.78330681058278,2.39622486963151,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.309157587715317,0.257640540045629,0,0,0.0974370051611986,0.252433774244115,0.184099797284599,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45616259939778,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0.868687840005475,0,0.716243852959582,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0.207970861530807,1.42743191037729,1.73472656537328,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24053903909388,2.91577749247319,1.68396056659844,1.92208723883551,4.09365799253363,0.482561763430822,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,6.42735719376638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,3.84991942105343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,1.59518878185802,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,1.69946265673865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0.171986032471617,0,0,0,0,1.412098027064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,3.0083580899397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5256112259285,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91156120596443,0,0.931577741257556,0,0.797525143673985,2.60872530905867,0.450772826991655,2.66563648518157,0.813741466409323,0.545545977607678,0.429642228169954,1.39210127963548,5.57334244178062,18.0012494098419,0.686791410365586,0,0,0,0,0,0,0.463044948647668,1.95789363605174,0,0,6.1399533882038,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.371807292777007,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0.784923038064294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=2.18014055124668,2.78330681058278,2.39622486963151,2.00146596706261,0.446961094427288,0.872338524100369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0.309157587715317,0.257640540045629,0,0,0.0974370051611986,0.252433774244115,0.184099797284599,0.161646056818812,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.45616259939778,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0.868687840005475,0,0.716243852959582,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0.207970861530807,1.42743191037729,1.73472656537328,0.702848489956279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24053903909388,2.91577749247319,1.68396056659844,1.92208723883551,4.09365799253363,0.482561763430822,0,0,0.177561725313127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,6.42735719376638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.0982490410131212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,3.84991942105343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,1.59518878185802,0,0,0,0,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,1.69946265673865,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0.171986032471617,0,0,0,0,1.412098027064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,3.0083580899397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.5256112259285,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.91156120596443,0,0.931577741257556,0,0.797525143673985,2.60872530905867,0.450772826991655,2.66563648518157,0.813741466409323,0.545545977607678,0.429642228169954,1.39210127963548,5.57334244178062,18.0012494098419,0.686791410365586,0,0,0,0,0,0,0.463044948647668,1.95789363605174,0,0,6.1399533882038,0.530067437837643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212574920101683,0.371807292777007,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0.784923038064294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:47414211..47414229,- | |short_description=p@chr12:47414211..47414229,- | ||
}} | }} |
Latest revision as of 08:43, 24 July 2015
Short description: | p@chr12:47414211..47414229, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:47414211..47414229, - |
Coexpression cluster: | C397_mesenchymal_Myoblast_rhabdomyosarcoma_Hepatic_Melanocyte_astrocytoma_Skeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte of the breast | 8.90e-22 | 3 |
adipocyte of breast | 1.45e-15 | 2 |
preadipocyte | 9.05e-15 | 12 |
omentum preadipocyte | 1.05e-10 | 3 |
adipocyte of omentum tissue | 1.41e-10 | 3 |
androgen binding protein secreting cell | 6.03e-09 | 1 |
seminiferous tubule epithelial cell | 6.03e-09 | 1 |
Sertoli cell | 6.03e-09 | 1 |
follicular cell of ovary | 8.78e-09 | 1 |
granulosa cell | 8.78e-09 | 1 |
mesenchymal stem cell of Wharton's jelly | 1.27e-08 | 1 |
fat cell | 6.55e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.46e-19 | 6 |
peritoneum | 1.46e-19 | 6 |
abdominal cavity | 1.46e-19 | 6 |
visceral peritoneum | 1.46e-19 | 6 |
breast | 9.82e-18 | 10 |
chest | 4.12e-16 | 11 |
body cavity | 2.67e-11 | 46 |
body cavity or lining | 1.60e-10 | 49 |
cavity lining | 7.19e-10 | 12 |
serous membrane | 7.19e-10 | 12 |
body cavity precursor | 2.03e-09 | 54 |
mesothelium | 6.03e-09 | 1 |
seminiferous tubule of testis | 6.03e-09 | 1 |
epithelium of male gonad | 6.03e-09 | 1 |
epithelial cord | 6.03e-09 | 1 |
sex cord | 6.03e-09 | 1 |
seminiferous tubule epithelium | 6.03e-09 | 1 |
testis sex cord | 6.03e-09 | 1 |
genital ridge | 6.03e-09 | 1 |
primitive sex cord of indifferent gonad | 6.03e-09 | 1 |
coelomic epithelium | 6.03e-09 | 1 |
intralobular bile duct | 2.64e-08 | 1 |
acinus | 2.64e-08 | 1 |
intrahepatic bile duct | 2.64e-08 | 1 |
portal lobule | 2.64e-08 | 1 |
hepatic acinus | 2.64e-08 | 1 |
anatomical cavity | 3.52e-08 | 61 |
subdivision of trunk | 5.02e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.80e-13 | 14 |
reproductive organ cancer | 1.69e-08 | 29 |
chondrosarcoma | 3.28e-08 | 1 |
extraosseous chondrosarcoma | 3.28e-08 | 1 |
myxoid chondrosarcoma | 3.28e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 3.28e-08 | 1 |