FFCP PHASE1:Hg19::chr13:31437623..31437639,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr13:31437623..31437639,+
|short_description=p@chr13:31437623..31437639,+
|description=CAGE_peak_at_chr13:31437623..31437639,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr13:31437623..31437639,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_at_chr13:31437623..31437639,+ | |||
|id=chr13:31437623..31437639,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.24e-31!5;CL:0000064!1.20e-18!3;CL:0005012!1.20e-18!3;CL:0000067!1.20e-18!3;CL:0002304!1.20e-18!3;CL:0000039!9.88e-15!7;CL:0000586!9.88e-15!7;CL:0000710!1.37e-10!20;CL:0000133!4.04e-10!59;CL:0000540!4.34e-10!6;CL:0000031!4.34e-10!6;CL:0000404!4.34e-10!6;CL:0002580!9.66e-09!3;CL:0002605!1.05e-08!3;CL:0000221!3.95e-08!71;CL:0000075!1.07e-07!27;CL:0000047!1.13e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.06e-52;5!CL:0000039;2.40e-24;7!CL:0000586;2.40e-24;7!CL:0002321;1.33e-17;15!CL:0000540;1.71e-16;6!CL:0000404;1.71e-16;6!CL:0000064;1.51e-14;3!CL:0000067;1.51e-14;3!CL:0005012;1.51e-14;3!CL:0002304;1.51e-14;3!CL:0000710;5.98e-13;20!CL:0000148;4.12e-10;10!CL:0000075;1.44e-09;27!CL:0002077;1.84e-07;34!CL:0000147;2.30e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.24e-52,5;CL:0000039,2.06e-24,7;CL:0000586,2.06e-24,7;CL:0000540,1.80e-16,6;CL:0000031,1.80e-16,6;CL:0000404,1.80e-16,6;CL:0000064,1.51e-14,3;CL:0000067,1.51e-14,3;CL:0005012,1.51e-14,3;CL:0002304,1.51e-14,3;CL:0000710,6.14e-13,20;CL:0000047,1.67e-12,8;CL:0000148,4.25e-10,10;CL:0000541,4.25e-10,10;CL:0000133,4.64e-10,59;CL:0000075,1.47e-09,27;CL:0000221,3.96e-08,72;CL:0002077,1.45e-07,34;CL:0000147,2.35e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.95e-26;10!UBERON:0005564;3.95e-26;10!CL:0000031;1.71e-16;6 | |||
|ontology_enrichment_disease=DOID:3095!8.82e-10!22;DOID:2994!8.82e-10!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.90e-17;22!DOID:2994;8.90e-17;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.30e-17,22;DOID:2994,8.30e-17,22 | |||
|ontology_enrichment_uberon=UBERON:0001778!1.20e-18!3;UBERON:0001775!1.20e-18!3;UBERON:0000488!3.95e-14!4;UBERON:0003135!5.31e-14!11;UBERON:0000473!6.60e-13!8;UBERON:0002203!1.37e-09!6;UBERON:0001768!1.37e-09!6;UBERON:0005418!2.21e-07!1;UBERON:0001389!2.21e-07!1;UBERON:0000026!2.21e-07!1;UBERON:0008784!2.21e-07!1;UBERON:0006058!2.21e-07!1;UBERON:0003663!2.21e-07!1;UBERON:0001383!2.21e-07!1;UBERON:0004256!2.21e-07!1;UBERON:0002529!2.21e-07!1;UBERON:0004708!2.21e-07!1;UBERON:0002101!2.21e-07!1;UBERON:0004709!2.21e-07!1;UBERON:0003661!2.21e-07!1;UBERON:0002471!2.21e-07!1;UBERON:0004357!2.21e-07!1;UBERON:0009872!2.21e-07!1;UBERON:0004347!2.21e-07!1;UBERON:0005420!2.21e-07!1;UBERON:0005732!2.21e-07!1;UBERON:0006057!2.21e-07!1;UBERON:0000978!2.21e-07!1;UBERON:0002103!2.21e-07!1;UBERON:0001665!2.21e-07!1;UBERON:0003823!2.21e-07!1;UBERON:0000154!2.21e-07!1;UBERON:0005733!2.21e-07!1;UBERON:0005730!2.21e-07!1;UBERON:0000991!2.59e-07!21;UBERON:0009196!2.59e-07!21;UBERON:0009117!2.59e-07!21;UBERON:0005564!2.59e-07!21;UBERON:0001301!4.34e-07!1;UBERON:0004176!5.74e-07!22;UBERON:0003101!7.06e-07!22;UBERON:0000079!7.06e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.40e-21;8!UBERON:0003135;1.32e-15;11!UBERON:0001778;1.51e-14;3!UBERON:0001775;1.51e-14;3!UBERON:0000991;1.98e-12;21!UBERON:0000922;6.71e-12;49!UBERON:0000488;3.78e-11;4!UBERON:0003101;6.60e-08;22!UBERON:0000079;6.60e-08;22!UBERON:0002203;9.99e-08;6!UBERON:0001768;9.99e-08;6!UBERON:0002200;9.99e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.10e-21,8;UBERON:0003135,1.20e-15,11;UBERON:0001778,1.51e-14,3;UBERON:0001775,1.51e-14,3;UBERON:0000991,1.87e-12,21;UBERON:0009196,1.87e-12,21;UBERON:0009117,1.87e-12,21;UBERON:0005564,1.87e-12,21;UBERON:0004176,6.93e-12,22;UBERON:0000488,3.78e-11,4;UBERON:0003101,6.31e-08,22;UBERON:0000079,6.31e-08,22;UBERON:0002203,9.99e-08,6;UBERON:0001768,9.99e-08,6;UBERON:0002200,9.99e-08,6 | |||
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|short_description=p@chr13:31437623..31437639,+ | |||
}} | }} |
Latest revision as of 15:35, 24 July 2015
Short description: | p@chr13:31437623..31437639, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:31437623..31437639, + |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.24e-52 | 5 |
germ line cell | 2.06e-24 | 7 |
germ cell | 2.06e-24 | 7 |
neuron | 1.80e-16 | 6 |
neuroblast | 1.80e-16 | 6 |
electrically signaling cell | 1.80e-16 | 6 |
ciliated cell | 1.51e-14 | 3 |
ciliated epithelial cell | 1.51e-14 | 3 |
multi-ciliated epithelial cell | 1.51e-14 | 3 |
non-pigmented ciliary epithelial cell | 1.51e-14 | 3 |
neurecto-epithelial cell | 6.14e-13 | 20 |
neuronal stem cell | 1.67e-12 | 8 |
melanocyte | 4.25e-10 | 10 |
melanoblast | 4.25e-10 | 10 |
neurectodermal cell | 4.64e-10 | 59 |
columnar/cuboidal epithelial cell | 1.47e-09 | 27 |
ectodermal cell | 3.96e-08 | 72 |
ecto-epithelial cell | 1.45e-07 | 34 |
pigment cell | 2.35e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
testis | 2.10e-21 | 8 |
male reproductive organ | 1.20e-15 | 11 |
ciliary epithelium | 1.51e-14 | 3 |
ciliary body | 1.51e-14 | 3 |
gonad | 1.87e-12 | 21 |
indifferent external genitalia | 1.87e-12 | 21 |
indifferent gonad | 1.87e-12 | 21 |
gonad primordium | 1.87e-12 | 21 |
external genitalia | 6.93e-12 | 22 |
atypical epithelium | 3.78e-11 | 4 |
male organism | 6.31e-08 | 22 |
male reproductive system | 6.31e-08 | 22 |
vasculature of eye | 9.99e-08 | 6 |
uvea | 9.99e-08 | 6 |
vasculature of head | 9.99e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.30e-17 | 22 |
germ cell cancer | 8.30e-17 | 22 |