FFCP PHASE1:Hg19::chr14:104689918..104689935,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr14:104689918..104689935,+ to FFCP PHASE1:Hg19::chr14:104689918..104689935,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000553757,ENST00000556528_5end | |||
|cluster_id=chr14:104689918..104689935,+ | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_1_at_ENST00000553757_5end,CAGE_peak_1_at_ENST00000556528_5end | |||
|id=chr14:104689918..104689935,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000333;5.48e-11;5 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;5.23e-11;10!DOID:169;3.81e-09;6!DOID:3095;8.46e-08;22!DOID:2994;8.46e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.17e-11,10;DOID:169,3.60e-09,6;DOID:3095,7.17e-08,22;DOID:2994,7.17e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.11e-34!115;UBERON:0000073!9.88e-22!94;UBERON:0001016!9.88e-22!94;UBERON:0001049!2.45e-19!57;UBERON:0005068!2.45e-19!57;UBERON:0006241!2.45e-19!57;UBERON:0007135!2.45e-19!57;UBERON:0000955!2.48e-19!69;UBERON:0006238!2.48e-19!69;UBERON:0005743!3.58e-19!86;UBERON:0001017!1.52e-18!82;UBERON:0002616!5.33e-18!59;UBERON:0002346!7.92e-18!90;UBERON:0003075!4.99e-17!86;UBERON:0007284!4.99e-17!86;UBERON:0002780!5.74e-16!41;UBERON:0001890!5.74e-16!41;UBERON:0006240!5.74e-16!41;UBERON:0003080!2.23e-15!42;UBERON:0003056!1.38e-12!61;UBERON:0000924!1.60e-12!173;UBERON:0006601!1.60e-12!173;UBERON:0002020!2.18e-12!34;UBERON:0003528!2.18e-12!34;UBERON:0001893!5.55e-12!34;UBERON:0004121!8.05e-12!169;UBERON:0000153!2.96e-11!129;UBERON:0007811!2.96e-11!129;UBERON:0002791!2.98e-11!33;UBERON:0001869!7.28e-11!32;UBERON:0000033!1.36e-10!123;UBERON:0002619!2.14e-10!22;UBERON:0001950!3.24e-10!20;UBERON:0000956!9.33e-10!25;UBERON:0000203!9.33e-10!25;UBERON:0000025!8.12e-08!194;UBERON:0000013!1.58e-07!5;UBERON:0002410!1.58e-07!5;UBERON:0002298!4.48e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002298;4.28e-12;6!UBERON:0000013;5.48e-11;5!UBERON:0002410;5.48e-11;5!UBERON:0000922;1.52e-10;49!UBERON:0000988;1.08e-09;3!UBERON:0001905;5.67e-08;2!UBERON:0002757;5.67e-08;2!UBERON:0010134;5.67e-08;2!UBERON:0005408;5.67e-08;2!UBERON:0001899;5.67e-08;2!UBERON:0002148;5.84e-07;2!UBERON:0006331;5.84e-07;2!UBERON:0009662;5.84e-07;2!UBERON:0002360;7.88e-07;2!UBERON:0000094;7.88e-07;2!UBERON:0010743;7.88e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,5.46e-12,6;UBERON:0000013,5.10e-11,5;UBERON:0002410,5.10e-11,5;UBERON:0001016,2.01e-10,89;UBERON:0000988,9.33e-10,3;UBERON:0011216,5.48e-09,223;UBERON:0001905,5.68e-08,2;UBERON:0002757,5.68e-08,2;UBERON:0010134,5.68e-08,2;UBERON:0005408,5.68e-08,2;UBERON:0001899,5.68e-08,2;UBERON:0005409,1.32e-07,25;UBERON:0001017,2.62e-07,81;UBERON:0007023,5.04e-07,114;UBERON:0002148,5.85e-07,2;UBERON:0006331,5.85e-07,2;UBERON:0009662,5.85e-07,2;UBERON:0002360,7.44e-07,2;UBERON:0000094,7.44e-07,2;UBERON:0010743,7.44e-07,2;UBERON:0004121,9.81e-07,171;UBERON:0000924,9.81e-07,171;UBERON:0006601,9.81e-07,171 | |||
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| ||
|short_description=p1@ENST00000553757,p1@ENST00000556528 | |||
}} | }} |
Latest revision as of 18:24, 24 July 2015
Short description: | p1@ENST00000553757, p1@ENST00000556528 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000553757_5end, CAGE_peak_1_at_ENST00000556528_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_ENST00000553757, ENST00000556528_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brainstem | 5.46e-12 | 6 |
sympathetic nervous system | 5.10e-11 | 5 |
autonomic nervous system | 5.10e-11 | 5 |
nervous system | 2.01e-10 | 89 |
pons | 9.33e-10 | 3 |
organ system subdivision | 5.48e-09 | 223 |
pineal body | 5.68e-08 | 2 |
regional part of epithalamus | 5.68e-08 | 2 |
secretory circumventricular organ | 5.68e-08 | 2 |
circumventricular organ | 5.68e-08 | 2 |
epithalamus | 5.68e-08 | 2 |
gastrointestinal system | 1.32e-07 | 25 |
central nervous system | 2.62e-07 | 81 |
adult organism | 5.04e-07 | 114 |
locus ceruleus | 5.85e-07 | 2 |
brainstem nucleus | 5.85e-07 | 2 |
hindbrain nucleus | 5.85e-07 | 2 |
meninx | 7.44e-07 | 2 |
membrane organ | 7.44e-07 | 2 |
meningeal cluster | 7.44e-07 | 2 |
ectoderm-derived structure | 9.81e-07 | 171 |
ectoderm | 9.81e-07 | 171 |
presumptive ectoderm | 9.81e-07 | 171 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.17e-11 | 10 |
neuroendocrine tumor | 3.60e-09 | 6 |
germ cell and embryonal cancer | 7.17e-08 | 22 |
germ cell cancer | 7.17e-08 | 22 |