FFCP PHASE1:Hg19::chr17:2466528..2466538,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:2466528..2466538,+ | |||
|description=CAGE_peak_at_chr17:2466528..2466538,+ | |description=CAGE_peak_at_chr17:2466528..2466538,+ | ||
|id=chr17:2466528..2466538,+ | |id=chr17:2466528..2466538,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.07e-29!43;CL:0000223!9.27e-22!59;CL:0002368!1.79e-19!13;CL:0002251!2.17e-15!21;CL:0000066!7.16e-13!254;CL:0002202!1.37e-10!9;CL:0002632!1.37e-10!9;CL:0002328!3.33e-09!3;CL:0002159!5.02e-09!13;CL:0002166!6.13e-09!3;CL:0000068!8.18e-09!3;CL:0000069!8.18e-09!3;CL:0000307!8.18e-09!3;CL:0000377!8.18e-09!3;CL:0002623!6.04e-08!3;CL:0002321!8.15e-07!248 | |ontology_enrichment_celltype=CL:0002076!1.07e-29!43;CL:0000223!9.27e-22!59;CL:0002368!1.79e-19!13;CL:0002251!2.17e-15!21;CL:0000066!7.16e-13!254;CL:0002202!1.37e-10!9;CL:0002632!1.37e-10!9;CL:0002328!3.33e-09!3;CL:0002159!5.02e-09!13;CL:0002166!6.13e-09!3;CL:0000068!8.18e-09!3;CL:0000069!8.18e-09!3;CL:0000307!8.18e-09!3;CL:0000377!8.18e-09!3;CL:0002623!6.04e-08!3;CL:0002321!8.15e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.18e-31;13!CL:0002076;4.04e-23;42!CL:0002328;1.35e-20;3!CL:0002202;1.98e-18;9!CL:0002632;1.98e-18;9!CL:0002231;4.57e-10;3!CL:0002166;6.27e-10;3!CL:0000307;6.27e-10;3!CL:0002621;1.07e-09;3!CL:0002251;2.84e-08;20!CL:0000244;1.75e-07;4!CL:0000731;1.75e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.54e-33,42;CL:0002368,8.55e-32,13;CL:0000223,1.81e-26,58;CL:0002328,6.66e-21,3;CL:0002202,1.75e-18,9;CL:0002632,1.75e-18,9;CL:0000066,5.84e-12,253;CL:0002166,5.74e-10,3;CL:0002231,5.74e-10,3;CL:0000068,8.58e-10,3;CL:0000069,8.58e-10,3;CL:0000307,8.58e-10,3;CL:0000377,8.58e-10,3;CL:0002621,1.07e-09,3;CL:0002251,2.48e-08,20;CL:0000244,2.28e-07,4;CL:0000731,2.28e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000223;5.53e-15;58!CL:0000377;6.27e-10;3 | |||
|ontology_enrichment_disease=DOID:1749!2.28e-11!14 | |ontology_enrichment_disease=DOID:1749!2.28e-11!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;2.71e-12;14!DOID:3151;3.00e-08;1!DOID:3149;3.00e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.92e-12,14;DOID:3151,3.11e-08,1;DOID:3149,3.11e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.86e-20!72;UBERON:0004119!2.23e-16!169;UBERON:0000925!2.23e-16!169;UBERON:0006595!2.23e-16!169;UBERON:0000166!7.84e-15!21;UBERON:0000161!1.57e-14!35;UBERON:0003729!2.44e-13!5;UBERON:0000065!1.42e-12!53;UBERON:0000165!2.44e-12!28;UBERON:0000930!2.44e-12!28;UBERON:0001007!2.36e-11!155;UBERON:0001555!2.36e-11!155;UBERON:0007026!2.36e-11!155;UBERON:0003343!3.47e-11!4;UBERON:0004785!3.47e-11!4;UBERON:0007196!6.56e-11!14;UBERON:0001558!6.56e-11!14;UBERON:0001444!1.24e-09!48;UBERON:0000344!1.97e-09!12;UBERON:0004921!2.76e-09!129;UBERON:0004185!2.76e-09!129;UBERON:0004815!3.33e-09!3;UBERON:0002031!3.33e-09!3;UBERON:0003126!5.10e-09!7;UBERON:0001005!5.10e-09!7;UBERON:0000974!1.04e-08!10;UBERON:0000077!2.10e-08!130;UBERON:0005178!2.14e-08!34;UBERON:0002224!2.14e-08!34;UBERON:0000365!2.23e-08!5;UBERON:0001041!2.62e-08!98;UBERON:0005181!4.43e-08!35;UBERON:0002106!2.79e-07!3;UBERON:0004854!2.79e-07!3;UBERON:0009034!2.79e-07!3;UBERON:0002095!2.79e-07!3;UBERON:0004782!2.79e-07!3;UBERON:0003281!2.79e-07!3;UBERON:0009664!2.79e-07!3;UBERON:0002296!2.79e-07!3;UBERON:0005602!2.79e-07!3;UBERON:0001179!2.79e-07!3;UBERON:0006293!2.79e-07!3;UBERON:0003102!3.14e-07!95;UBERON:0005910!5.66e-07!6;UBERON:0002185!5.70e-07!4;UBERON:0001708!8.93e-07!4;UBERON:0001704!8.93e-07!4;UBERON:0000464!9.96e-07!104 | |ontology_enrichment_uberon=UBERON:0001004!1.86e-20!72;UBERON:0004119!2.23e-16!169;UBERON:0000925!2.23e-16!169;UBERON:0006595!2.23e-16!169;UBERON:0000166!7.84e-15!21;UBERON:0000161!1.57e-14!35;UBERON:0003729!2.44e-13!5;UBERON:0000065!1.42e-12!53;UBERON:0000165!2.44e-12!28;UBERON:0000930!2.44e-12!28;UBERON:0001007!2.36e-11!155;UBERON:0001555!2.36e-11!155;UBERON:0007026!2.36e-11!155;UBERON:0003343!3.47e-11!4;UBERON:0004785!3.47e-11!4;UBERON:0007196!6.56e-11!14;UBERON:0001558!6.56e-11!14;UBERON:0001444!1.24e-09!48;UBERON:0000344!1.97e-09!12;UBERON:0004921!2.76e-09!129;UBERON:0004185!2.76e-09!129;UBERON:0004815!3.33e-09!3;UBERON:0002031!3.33e-09!3;UBERON:0003126!5.10e-09!7;UBERON:0001005!5.10e-09!7;UBERON:0000974!1.04e-08!10;UBERON:0000077!2.10e-08!130;UBERON:0005178!2.14e-08!34;UBERON:0002224!2.14e-08!34;UBERON:0000365!2.23e-08!5;UBERON:0001041!2.62e-08!98;UBERON:0005181!4.43e-08!35;UBERON:0002106!2.79e-07!3;UBERON:0004854!2.79e-07!3;UBERON:0009034!2.79e-07!3;UBERON:0002095!2.79e-07!3;UBERON:0004782!2.79e-07!3;UBERON:0003281!2.79e-07!3;UBERON:0009664!2.79e-07!3;UBERON:0002296!2.79e-07!3;UBERON:0005602!2.79e-07!3;UBERON:0001179!2.79e-07!3;UBERON:0006293!2.79e-07!3;UBERON:0003102!3.14e-07!95;UBERON:0005910!5.66e-07!6;UBERON:0002185!5.70e-07!4;UBERON:0001708!8.93e-07!4;UBERON:0001704!8.93e-07!4;UBERON:0000464!9.96e-07!104 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.35e-20;3!UBERON:0002031;1.35e-20;3!UBERON:0002185;1.37e-12;5!UBERON:0007196;5.42e-11;15!UBERON:0001558;5.42e-11;15!UBERON:0004807;2.56e-10;22!UBERON:0001949;1.07e-09;3!UBERON:0000485;3.89e-09;7!UBERON:0000486;6.22e-09;12!UBERON:0005911;1.46e-08;36!UBERON:0003729;1.46e-08;13!UBERON:0003343;5.23e-08;4!UBERON:0004785;5.23e-08;4!UBERON:0000065;6.37e-08;44!UBERON:0001708;1.18e-07;4!UBERON:0008895;1.18e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,6.66e-21,3;UBERON:0002031,6.66e-21,3;UBERON:0001004,8.01e-13,74;UBERON:0002185,9.02e-13,5;UBERON:0007196,5.04e-11,15;UBERON:0001558,5.04e-11,15;UBERON:0004119,7.42e-10,160;UBERON:0000925,7.42e-10,160;UBERON:0006595,7.42e-10,160;UBERON:0001949,1.07e-09,3;UBERON:0000065,1.30e-08,54;UBERON:0003729,1.46e-08,13;UBERON:0004807,4.42e-08,28;UBERON:0003343,5.23e-08,4;UBERON:0004785,5.23e-08,4;UBERON:0001708,1.10e-07,4;UBERON:0008895,1.10e-07,4;UBERON:0000485,2.64e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.8072355126695,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,0,1.43402297694502,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.878002283269004,0,0.301586917234893,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,1.51183915378974,0.850650583454319,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,6.07734526976916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65284915360978,1.53752053892085,0.893288987462089,2.6301023022443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,2.68120910214315,1.08890984861323,0.188287601553558,0.86101074534246,0,1.33029046061003,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910347586283997,0,0,0,0,0,0,0,0,0,0,0,0,3.48559360696508,0.0769502585037971,0,0,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34797542718508,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,0,0,0,0,0,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,2.34804281319486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.57589713956872,0.353909170043221,4.4022863645203,0.693153996902029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,1.91643641459393,1.60710550763486,0.336283722218824,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,1.10609528212909,0,0,0,0.62164849248911,0.17071847709395,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75904826792687,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,0.0999411559249289,9.46335874609985,4.94052820401969,0,0,0,0,0,0,0,0,0,0,0,0,0.546327859818478,0,0.305966489225945,0,0.18378979906969,0,0,0,0,0,0,0.476128862927481,0,0.0620747142958579,0,0,0,0.217716747896961,0,0.134704106029175,0.215166616178029,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.8072355126695,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.82147644146271,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54608682530637,0,1.43402297694502,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.878002283269004,0,0.301586917234893,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81201501960331,1.51183915378974,0.850650583454319,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,6.07734526976916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65284915360978,1.53752053892085,0.893288987462089,2.6301023022443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.769776901804097,2.68120910214315,1.08890984861323,0.188287601553558,0.86101074534246,0,1.33029046061003,1.1486170010348,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0.102268682502155,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910347586283997,0,0,0,0,0,0,0,0,0,0,0,0,3.48559360696508,0.0769502585037971,0,0,0.538545866458633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34797542718508,0,0.789168805698781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12990370390266,0,0,0,0,0,0,0,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,2.34804281319486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276697269872462,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.57589713956872,0.353909170043221,4.4022863645203,0.693153996902029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,1.91643641459393,1.60710550763486,0.336283722218824,0,0,0,0,0,0,0,0,0,0.156986185701028,0,0,0,0,0,0,1.10609528212909,0,0,0,0.62164849248911,0.17071847709395,0.691259661814092,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75904826792687,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0.128915775947154,0.0999411559249289,9.46335874609985,4.94052820401969,0,0,0,0,0,0,0,0,0,0,0,0,0.546327859818478,0,0.305966489225945,0,0.18378979906969,0,0,0,0,0,0,0.476128862927481,0,0.0620747142958579,0,0,0,0.217716747896961,0,0.134704106029175,0.215166616178029,0.332660356546013,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:2466528..2466538,+ | |short_description=p@chr17:2466528..2466538,+ | ||
}} | }} |
Latest revision as of 14:47, 25 July 2015
Short description: | p@chr17:2466528..2466538, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:2466528..2466538, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.54e-33 | 42 |
respiratory epithelial cell | 8.55e-32 | 13 |
endodermal cell | 1.81e-26 | 58 |
bronchial epithelial cell | 6.66e-21 | 3 |
epithelial cell of tracheobronchial tree | 1.75e-18 | 9 |
epithelial cell of lower respiratory tract | 1.75e-18 | 9 |
epithelial cell | 5.84e-12 | 253 |
epithelial cell of Malassez | 5.74e-10 | 3 |
epithelial cell of prostate | 5.74e-10 | 3 |
duct epithelial cell | 8.58e-10 | 3 |
branched duct epithelial cell | 8.58e-10 | 3 |
tracheal epithelial cell | 8.58e-10 | 3 |
tracheoblast | 8.58e-10 | 3 |
gingival epithelial cell | 1.07e-09 | 3 |
epithelial cell of alimentary canal | 2.48e-08 | 20 |
transitional epithelial cell | 2.28e-07 | 4 |
urothelial cell | 2.28e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 6.66e-21 | 3 |
epithelium of bronchus | 6.66e-21 | 3 |
respiratory system | 8.01e-13 | 74 |
bronchus | 9.02e-13 | 5 |
tracheobronchial tree | 5.04e-11 | 15 |
lower respiratory tract | 5.04e-11 | 15 |
endoderm-derived structure | 7.42e-10 | 160 |
endoderm | 7.42e-10 | 160 |
presumptive endoderm | 7.42e-10 | 160 |
gingival epithelium | 1.07e-09 | 3 |
respiratory tract | 1.30e-08 | 54 |
mouth mucosa | 1.46e-08 | 13 |
respiratory system epithelium | 4.42e-08 | 28 |
mucosa of oral region | 5.23e-08 | 4 |
respiratory system mucosa | 5.23e-08 | 4 |
jaw skeleton | 1.10e-07 | 4 |
splanchnocranium | 1.10e-07 | 4 |
simple columnar epithelium | 2.64e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.92e-12 | 14 |
skin squamous cell carcinoma | 3.11e-08 | 1 |
keratoacanthoma | 3.11e-08 | 1 |