FFCP PHASE1:Hg19::chr1:165603546..165603548,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:165603546..165603548,+ | |||
|description=CAGE_peak_at_chr1:165603546..165603548,+ | |description=CAGE_peak_at_chr1:165603546..165603548,+ | ||
|id=chr1:165603546..165603548,+ | |id=chr1:165603546..165603548,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002569;2.45e-12;6!CL:0000081;2.47e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002569,2.74e-12,6;CL:0000081,2.63e-07,11 | |||
|ontology_enrichment_development_v019=UBERON:0006215;3.27e-23;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.48e-10!115;UBERON:0002346!2.78e-08!90;UBERON:0001049!7.37e-08!57;UBERON:0005068!7.37e-08!57;UBERON:0006241!7.37e-08!57;UBERON:0007135!7.37e-08!57;UBERON:0002771!1.67e-07!3;UBERON:0002616!1.89e-07!59;UBERON:0003075!3.65e-07!86;UBERON:0007284!3.65e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002771;5.04e-34;2!UBERON:0000200;2.45e-12;6!UBERON:0002037;2.45e-12;6!UBERON:0003422;2.45e-12;6!UBERON:0001871;8.99e-11;6!UBERON:0003104;8.99e-11;7!UBERON:0009142;8.99e-11;7!UBERON:0002680;1.12e-08;9!UBERON:0001895;1.12e-08;9!UBERON:0002331;6.13e-08;10!UBERON:0004733;7.92e-07;12!UBERON:0002028;7.92e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002771,3.61e-34,2;UBERON:0000200,2.19e-12,6;UBERON:0002037,2.45e-12,6;UBERON:0006215,2.45e-12,6;UBERON:0003422,2.74e-12,6;UBERON:0001871,8.16e-11,6;UBERON:0002680,1.12e-08,9;UBERON:0001895,1.12e-08,9;UBERON:0010092,1.12e-08,9;UBERON:0002331,6.56e-08,10;UBERON:0000358,6.56e-08,10;UBERON:0000307,6.56e-08,10;UBERON:0000091,6.56e-08,10;UBERON:0000087,6.56e-08,10;UBERON:0007010,6.56e-08,10;UBERON:0007806,6.56e-08,10;UBERON:0008780,6.56e-08,10;UBERON:0005728,6.56e-08,10;UBERON:0004733,7.92e-07,12;UBERON:0002028,7.92e-07,12;UBERON:0007277,7.92e-07,12 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0.267540828089713,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.60298219312704,1.52581736317083,0.331737779793674,0,0,0,0,0.230850775511391,0,0,0.179515288819544,0.108647371922008,0.31900115973192,0,0,0,0,0,0.225595660617181,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0.802577647298789,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0.432271251462318,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0.399358000997982,0,0,0.268733889946905,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,1.70836770862748,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0.9555033757741,0.142953088353313,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0.193373663920732,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22465726229299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0.267540828089713,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.0654895377488563,0,0,0,0.348259474598534,0.132957960518865,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,1.14861935834114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920809889358963,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0.0915694648183434,0,0,0,0,0,0,0.15350367472613,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0874599999961957,0,0,0,0,0,0,0,0,0.60298219312704,1.52581736317083,0.331737779793674,0,0,0,0,0.230850775511391,0,0,0.179515288819544,0.108647371922008,0.31900115973192,0,0,0,0,0,0.225595660617181,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0,0.802577647298789,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0.432271251462318,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458320848023367,0,0.399358000997982,0,0,0.268733889946905,0,0,0,0,0.0674035438541849,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0.182248669974074,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0,0,0,0,1.70836770862748,0.250381861413,0,0.110929051536852,0.124192805882767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0.159296767163702,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0,0,0,0,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0.261906694481422,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0.175871244359621,0,0,0,0,0,0.0887023701626388,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0.9555033757741,0.142953088353313,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0.235676547101626,0,0,0,0,0,0.193373663920732,0,0.178553938605658,0.352894871715692,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0,0,0,0,0,0.0636471582781649,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:165603546..165603548,+ | |short_description=p@chr1:165603546..165603548,+ | ||
}} | }} |
Latest revision as of 23:56, 27 July 2015
Short description: | p@chr1:165603546..165603548, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:165603546..165603548, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 2.74e-12 | 6 |
blood cell | 2.63e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 3.61e-34 | 2 |
gyrus | 2.19e-12 | 6 |
cerebellum | 2.45e-12 | 6 |
rhombic lip | 2.45e-12 | 6 |
mesenchyme of umbilical cord | 2.74e-12 | 6 |
temporal lobe | 8.16e-11 | 6 |
regional part of metencephalon | 1.12e-08 | 9 |
metencephalon | 1.12e-08 | 9 |
future metencephalon | 1.12e-08 | 9 |
umbilical cord | 6.56e-08 | 10 |
blastocyst | 6.56e-08 | 10 |
blastula | 6.56e-08 | 10 |
bilaminar disc | 6.56e-08 | 10 |
inner cell mass | 6.56e-08 | 10 |
cleaving embryo | 6.56e-08 | 10 |
connecting stalk | 6.56e-08 | 10 |
inner cell mass derived epiblast | 6.56e-08 | 10 |
extraembryonic mesoderm | 6.56e-08 | 10 |
segmental subdivision of hindbrain | 7.92e-07 | 12 |
hindbrain | 7.92e-07 | 12 |
presumptive hindbrain | 7.92e-07 | 12 |