FFCP PHASE1:Hg19::chr1:203148057..203148072,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:203148057..203148072,+ | |||
|coexpression_cluster_id=C283 | |||
|description=CAGE_peak_at_chr1:203148057..203148072,+ | |description=CAGE_peak_at_chr1:203148057..203148072,+ | ||
|id=chr1:203148057..203148072,+ | |id=chr1:203148057..203148072,+ | ||
|ontology_enrichment_celltype=CL:0000153!9.63e-17!9;CL:0000447!9.63e-17!9;CL:0000135!2.54e-13!3;CL:0000386!2.54e-13!3;CL:0000388!2.54e-13!3;CL:0000667!1.30e-11!6;CL:0000058!1.30e-11!6;CL:0000138!1.30e-11!6;CL:0000499!3.55e-11!27;CL:0000327!1.66e-10!14;CL:0000235!2.25e-10!10;CL:0002540!5.96e-07!6;CL:0000214!8.60e-07!3 | |ontology_enrichment_celltype=CL:0000153!9.63e-17!9;CL:0000447!9.63e-17!9;CL:0000135!2.54e-13!3;CL:0000386!2.54e-13!3;CL:0000388!2.54e-13!3;CL:0000667!1.30e-11!6;CL:0000058!1.30e-11!6;CL:0000138!1.30e-11!6;CL:0000499!3.55e-11!27;CL:0000327!1.66e-10!14;CL:0000235!2.25e-10!10;CL:0002540!5.96e-07!6;CL:0000214!8.60e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000153;2.70e-46;9!CL:0000447;2.70e-46;9!CL:0000235;3.43e-31;6!CL:0000138;4.68e-31;6!CL:0000327;1.02e-27;15!CL:0000499;6.28e-26;28!CL:0000214;5.52e-17;3!CL:0000135;9.63e-17;3!CL:0000388;9.63e-17;3!CL:0000151;5.74e-09;36!CL:0002540;6.26e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,2.06e-46,9;CL:0000447,2.06e-46,9;CL:0000235,3.43e-31,6;CL:0000058,3.43e-31,6;CL:0000138,3.43e-31,6;CL:0000327,8.70e-28,15;CL:0000499,5.69e-26,28;CL:0000214,5.75e-17,3;CL:0000135,1.00e-16,3;CL:0000388,1.00e-16,3;CL:0000151,2.07e-11,36;CL:0002540,6.26e-09,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5662;3.54e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:5662,3.76e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0000043!2.54e-13!3;UBERON:0006915!8.60e-07!3;UBERON:0002018!8.60e-07!3;UBERON:0002217!8.60e-07!3;UBERON:0007616!8.60e-07!3 | |ontology_enrichment_uberon=UBERON:0000043!2.54e-13!3;UBERON:0006915!8.60e-07!3;UBERON:0002018!8.60e-07!3;UBERON:0002217!8.60e-07!3;UBERON:0007616!8.60e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0006915;5.52e-17;3!UBERON:0007616;5.52e-17;3!UBERON:0002217;5.52e-17;3!UBERON:0002018;5.52e-17;3!UBERON:0007846;9.63e-17;3!UBERON:0000043;9.63e-17;3!UBERON:0007845;9.63e-17;3!UBERON:0001282;4.23e-13;1!UBERON:0009842;4.23e-13;1!UBERON:0003704;4.23e-13;1!UBERON:0001171;4.23e-13;1!UBERON:0001172;4.23e-13;1!UBERON:0004905;6.33e-07;8!UBERON:0000982;6.33e-07;8!UBERON:0004770;6.33e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006915,5.75e-17,3;UBERON:0007616,5.75e-17,3;UBERON:0002217,5.75e-17,3;UBERON:0002018,5.75e-17,3;UBERON:0007846,1.00e-16,3;UBERON:0000043,1.00e-16,3;UBERON:0007845,1.00e-16,3;UBERON:0001282,4.23e-13,1;UBERON:0009842,4.23e-13,1;UBERON:0003704,4.23e-13,1;UBERON:0001171,4.23e-13,1;UBERON:0001172,4.23e-13,1;UBERON:0002204,5.38e-07,167;UBERON:0004905,6.42e-07,8;UBERON:0000982,6.42e-07,8;UBERON:0004770,6.42e-07,8 | |||
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| ||
|short_description=p@chr1:203148057..203148072,+ | |short_description=p@chr1:203148057..203148072,+ | ||
}} | }} |
Latest revision as of 02:23, 28 July 2015
Short description: | p@chr1:203148057..203148072, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:203148057..203148072, + |
Coexpression cluster: | C283_tenocyte_Chondrocyte_mesenchymal_Macrophage_pleomorphic_Synoviocyte_cholangiocellular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 2.06e-46 | 9 |
carbohydrate secreting cell | 2.06e-46 | 9 |
macrophage | 3.43e-31 | 6 |
chondroblast | 3.43e-31 | 6 |
chondrocyte | 3.43e-31 | 6 |
extracellular matrix secreting cell | 8.70e-28 | 15 |
stromal cell | 5.69e-26 | 28 |
synovial cell | 5.75e-17 | 3 |
fibrocyte | 1.00e-16 | 3 |
tendon cell | 1.00e-16 | 3 |
secretory cell | 2.07e-11 | 36 |
mesenchymal stem cell of the bone marrow | 6.26e-09 | 6 |
Ontology term | p-value | n |
---|---|---|
stratified squamous epithelium | 5.75e-17 | 3 |
layer of synovial tissue | 5.75e-17 | 3 |
synovial joint | 5.75e-17 | 3 |
synovial membrane of synovial joint | 5.75e-17 | 3 |
dense regular connective tissue | 1.00e-16 | 3 |
tendon | 1.00e-16 | 3 |
regular connective tissue | 1.00e-16 | 3 |
intralobular bile duct | 4.23e-13 | 1 |
acinus | 4.23e-13 | 1 |
intrahepatic bile duct | 4.23e-13 | 1 |
portal lobule | 4.23e-13 | 1 |
hepatic acinus | 4.23e-13 | 1 |
musculoskeletal system | 5.38e-07 | 167 |
articulation | 6.42e-07 | 8 |
skeletal joint | 6.42e-07 | 8 |
articular system | 6.42e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 3.76e-13 | 1 |