FFCP PHASE1:Hg19::chr1:56320708..56320728,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:56320708..56320728,- | |||
|description=CAGE_peak_at_chr1:56320708..56320728,- | |description=CAGE_peak_at_chr1:56320708..56320728,- | ||
|id=chr1:56320708..56320728,- | |id=chr1:56320708..56320728,- | ||
|ontology_enrichment_celltype=CL:0002620!3.29e-16!23;CL:0000057!2.65e-15!75;CL:0000135!4.56e-12!3;CL:0000386!4.56e-12!3;CL:0000388!4.56e-12!3;CL:0000197!1.96e-10!6;CL:0000098!1.96e-10!6;CL:0002167!1.96e-10!6;CL:0000594!2.26e-10!3;CL:0000055!1.42e-09!180;CL:0002334!5.69e-07!12 | |ontology_enrichment_celltype=CL:0002620!3.29e-16!23;CL:0000057!2.65e-15!75;CL:0000135!4.56e-12!3;CL:0000386!4.56e-12!3;CL:0000388!4.56e-12!3;CL:0000197!1.96e-10!6;CL:0000098!1.96e-10!6;CL:0002167!1.96e-10!6;CL:0000594!2.26e-10!3;CL:0000055!1.42e-09!180;CL:0002334!5.69e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000135;7.13e-34;3!CL:0000388;7.13e-34;3!CL:0000197;6.85e-30;6!CL:0000098;6.85e-30;6!CL:0002167;6.85e-30;6!CL:0000214;6.25e-16;3!CL:0000499;6.79e-10;28!CL:0000710;3.69e-09;20!CL:0002620;6.36e-08;23!CL:0000075;7.94e-07;27!CL:0002617;8.76e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000135,8.46e-34,3;CL:0000388,8.46e-34,3;CL:0000197,4.39e-30,6;CL:0000098,4.39e-30,6;CL:0002167,4.39e-30,6;CL:0000214,4.30e-16,3;CL:0000499,6.36e-10,28;CL:0000710,3.25e-09,20;CL:0000057,2.00e-08,76;CL:0002620,5.80e-08,23;CL:0000075,7.23e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!1.27e-17!5;DOID:450!1.27e-17!5;DOID:66!1.27e-17!5;DOID:423!1.27e-17!5;DOID:0080000!1.27e-17!5;DOID:11722!1.27e-17!5 | |||
|ontology_enrichment_disease_v019=DOID:17;1.01e-09;5!DOID:450;1.01e-09;5!DOID:66;1.01e-09;5!DOID:423;1.01e-09;5!DOID:0080000;1.01e-09;5!DOID:11722;1.01e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.01e-09,5;DOID:450,1.01e-09,5;DOID:66,1.01e-09,5;DOID:423,1.01e-09,5;DOID:0080000,1.01e-09,5;DOID:11722,1.01e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000043!4.56e-12!3;UBERON:0002097!4.44e-10!40;UBERON:0002199!1.13e-08!45;UBERON:0002416!1.13e-08!45;UBERON:0000341!6.66e-08!2;UBERON:0004457!3.11e-07!12;UBERON:0000042!3.11e-07!12 | |ontology_enrichment_uberon=UBERON:0000043!4.56e-12!3;UBERON:0002097!4.44e-10!40;UBERON:0002199!1.13e-08!45;UBERON:0002416!1.13e-08!45;UBERON:0000341!6.66e-08!2;UBERON:0004457!3.11e-07!12;UBERON:0000042!3.11e-07!12 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;7.13e-34;3!UBERON:0000043;7.13e-34;3!UBERON:0007845;7.13e-34;3!UBERON:0006915;6.25e-16;3!UBERON:0007616;6.25e-16;3!UBERON:0002217;6.25e-16;3!UBERON:0002018;6.25e-16;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,8.46e-34,3;UBERON:0000043,8.46e-34,3;UBERON:0007845,8.46e-34,3;UBERON:0006915,4.30e-16,3;UBERON:0007616,4.30e-16,3;UBERON:0002217,4.30e-16,3;UBERON:0002018,4.30e-16,3 | |||
|phase1_expression=0,1.07050261945492,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0.179389635688862,1.49490172172997,1.69545520927649,0.300091096084402,0.618315175430633,0.257640540045629,0.18611685633159,0,0.194874010322397,0.504867548488229,2.30124746605748,1.93975268182574,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,2.49565033836969,1.60586089917446,2.36553622550902,1.87426263988341,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48864684691266,0.306923946576125,0,0.384417447767103,0.511707249066704,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.534192213880424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.565621727814851,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89996871767898,3.29294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02232813071253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.443716206147409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21577286947635,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48798007266701,3.23522940041993,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.714193294391221,0,0,0,0.381882949668989,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,1.07050261945492,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.494533858557114,0,0,0,0,0,0,0,0.150238058906597,0,0.179389635688862,1.49490172172997,1.69545520927649,0.300091096084402,0.618315175430633,0.257640540045629,0.18611685633159,0,0.194874010322397,0.504867548488229,2.30124746605748,1.93975268182574,0,0,0,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,2.49565033836969,1.60586089917446,2.36553622550902,1.87426263988341,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48864684691266,0.306923946576125,0,0.384417447767103,0.511707249066704,0,0,0,0,0,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.534192213880424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.565621727814851,0,0,0,0,0,0,0,0,0,0,0,0,0,1.89996871767898,3.29294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451961481561065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02232813071253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0.443716206147409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352675943690684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.21577286947635,0,0,0,0.801711364730253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48798007266701,3.23522940041993,1.73050624849516,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.714193294391221,0,0,0,0.381882949668989,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr1:56320708..56320728,- | |short_description=p@chr1:56320708..56320728,- | ||
}} | }} |
Latest revision as of 09:17, 28 July 2015
Short description: | p@chr1:56320708..56320728, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:56320708..56320728, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 8.46e-34 | 3 |
tendon cell | 8.46e-34 | 3 |
receptor cell | 4.39e-30 | 6 |
sensory epithelial cell | 4.39e-30 | 6 |
olfactory epithelial cell | 4.39e-30 | 6 |
synovial cell | 4.30e-16 | 3 |
stromal cell | 6.36e-10 | 28 |
neurecto-epithelial cell | 3.25e-09 | 20 |
fibroblast | 2.00e-08 | 76 |
skin fibroblast | 5.80e-08 | 23 |
columnar/cuboidal epithelial cell | 7.23e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 8.46e-34 | 3 |
tendon | 8.46e-34 | 3 |
regular connective tissue | 8.46e-34 | 3 |
stratified squamous epithelium | 4.30e-16 | 3 |
layer of synovial tissue | 4.30e-16 | 3 |
synovial joint | 4.30e-16 | 3 |
synovial membrane of synovial joint | 4.30e-16 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.01e-09 | 5 |
myotonic disease | 1.01e-09 | 5 |
muscle tissue disease | 1.01e-09 | 5 |
myopathy | 1.01e-09 | 5 |
muscular disease | 1.01e-09 | 5 |
myotonic dystrophy | 1.01e-09 | 5 |