FFCP PHASE1:Hg19::chr1:62072099..62072122,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:62072099..62072122,+ | |||
|coexpression_cluster_id=C125 | |coexpression_cluster_id=C125 | ||
|description=CAGE_peak_at_chr1:62072099..62072122,+ | |description=CAGE_peak_at_chr1:62072099..62072122,+ | ||
|id=chr1:62072099..62072122,+ | |id=chr1:62072099..62072122,+ | ||
|ontology_enrichment_celltype=CL:0000319;1.84e-34;1!CL:0000860;5.99e-23;33!CL:0002057;5.99e-23;33!CL:0000159;5.48e-18;2!CL:0000576;9.29e-14;48!CL:0000473;2.34e-12;39!CL:0000234;2.34e-12;39!CL:0000766;3.96e-08;69 | |ontology_enrichment_celltype=CL:0002057!2.26e-39!42;CL:0000860!1.76e-36!45;CL:0002194!1.86e-24!63;CL:0000576!1.86e-24!63;CL:0000040!1.86e-24!63;CL:0000559!1.86e-24!63;CL:0002009!1.36e-23!65;CL:0000839!1.19e-21!70;CL:0000557!2.71e-21!71;CL:0000766!1.19e-19!76;CL:0000763!3.96e-12!112;CL:0000049!3.96e-12!112;CL:0002087!3.41e-11!119;CL:0002031!1.37e-10!124;CL:0000738!5.93e-09!140;CL:0000319!2.95e-07!1;CL:0002032!4.87e-07!165;CL:0000837!4.87e-07!165 | ||
| | |ontology_enrichment_celltype_v019=CL:0000319;1.84e-34;1!CL:0000860;5.99e-23;33!CL:0002057;5.99e-23;33!CL:0000159;5.48e-18;2!CL:0000576;9.29e-14;48!CL:0000473;2.34e-12;39!CL:0000234;2.34e-12;39!CL:0000766;3.96e-08;69 | ||
|ontology_enrichment_disease=DOID:3030;1.84e-34;1 | |ontology_enrichment_celltype_v019_2=CL:0000319,1.84e-34,1;CL:0000860,5.03e-20,42;CL:0002057,5.03e-20,42;CL:0000159,5.48e-18,2;CL:0000473,1.36e-17,48;CL:0000234,1.36e-17,48;CL:0002194,3.50e-14,59;CL:0000576,3.50e-14,59;CL:0000040,3.50e-14,59;CL:0000559,3.50e-14,59;CL:0002009,9.68e-14,61;CL:0000839,9.43e-13,66;CL:0000557,1.43e-12,67;CL:0000766,9.64e-12,72;CL:0000763,5.35e-08,108;CL:0000049,5.35e-08,108;CL:0002087,1.55e-07,115;CL:0002031,3.07e-07,120 | ||
|ontology_enrichment_uberon= | |ontology_enrichment_development_v019=CL:0002057;1.57e-16;42 | ||
|ontology_enrichment_disease=DOID:1749!1.95e-09!14;DOID:3030!2.95e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:3030;1.84e-34;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.84e-34,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.75e-18!80;UBERON:0001474!6.20e-17!86;UBERON:0004765!1.36e-15!101;UBERON:0001434!1.36e-15!101;UBERON:0002390!1.09e-13!102;UBERON:0003061!1.09e-13!102;UBERON:0002193!3.96e-12!112;UBERON:0002405!1.03e-11!115;UBERON:0002204!7.33e-08!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.72e-11,76;UBERON:0001474,2.22e-10,82;UBERON:0004765,1.67e-09,90;UBERON:0002405,3.25e-09,93;UBERON:0002390,9.08e-09,98;UBERON:0003061,9.08e-09,98;UBERON:0001434,1.33e-08,100;UBERON:0002193,5.35e-08,108 | |||
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|short_description=p@chr1:62072099..62072122,+ | |short_description=p@chr1:62072099..62072122,+ | ||
}} | }} |
Latest revision as of 09:32, 28 July 2015
Short description: | p@chr1:62072099..62072122, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:62072099..62072122, + |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 1.84e-34 | 1 |
classical monocyte | 5.03e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.03e-20 | 42 |
seromucus secreting cell | 5.48e-18 | 2 |
defensive cell | 1.36e-17 | 48 |
phagocyte | 1.36e-17 | 48 |
monopoietic cell | 3.50e-14 | 59 |
monocyte | 3.50e-14 | 59 |
monoblast | 3.50e-14 | 59 |
promonocyte | 3.50e-14 | 59 |
macrophage dendritic cell progenitor | 9.68e-14 | 61 |
myeloid lineage restricted progenitor cell | 9.43e-13 | 66 |
granulocyte monocyte progenitor cell | 1.43e-12 | 67 |
myeloid leukocyte | 9.64e-12 | 72 |
myeloid cell | 5.35e-08 | 108 |
common myeloid progenitor | 5.35e-08 | 108 |
nongranular leukocyte | 1.55e-07 | 115 |
hematopoietic lineage restricted progenitor cell | 3.07e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.72e-11 | 76 |
bone element | 2.22e-10 | 82 |
skeletal element | 1.67e-09 | 90 |
immune system | 3.25e-09 | 93 |
hematopoietic system | 9.08e-09 | 98 |
blood island | 9.08e-09 | 98 |
skeletal system | 1.33e-08 | 100 |
hemolymphoid system | 5.35e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.84e-34 | 1 |