FFCP PHASE1:Hg19::chr20:42837055..42837068,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:42837055..42837068,- to FFCP PHASE1:Hg19::chr20:42837055..42837068,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:42837055..42837068,- | |||
|coexpression_cluster_id=C306 | |||
|description=CAGE_peak_at_chr20:42837055..42837068,- | |||
|id=chr20:42837055..42837068,- | |||
|ontology_enrichment_celltype=CL:0000738!9.84e-24!140;CL:0002087!5.97e-20!119;CL:0002031!4.53e-19!124;CL:0000037!4.32e-15!172;CL:0000566!4.32e-15!172;CL:0000766!1.69e-14!76;CL:0000988!2.12e-13!182;CL:0002032!4.09e-13!165;CL:0000837!4.09e-13!165;CL:0000860!9.74e-13!45;CL:0002009!5.60e-12!65;CL:0002057!2.15e-11!42;CL:0000557!2.17e-11!71;CL:0002194!2.70e-11!63;CL:0000576!2.70e-11!63;CL:0000040!2.70e-11!63;CL:0000559!2.70e-11!63;CL:0000839!5.85e-11!70;CL:0000838!5.79e-08!52;CL:0000542!8.15e-08!53;CL:0000051!8.15e-08!53 | |||
|ontology_enrichment_celltype_v019=CL:0000624;4.72e-08;6!CL:0000542;9.47e-08;53!CL:0000094;1.50e-07;8!CL:0000576;9.38e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.31e-25,136;CL:0002087,8.90e-20,115;CL:0002031,8.67e-19,120;CL:0000037,4.25e-18,168;CL:0000988,2.73e-17,177;CL:0002032,2.00e-15,161;CL:0000837,2.00e-15,161;CL:0000766,1.12e-12,72;CL:0000838,9.90e-11,52;CL:0000860,1.89e-10,42;CL:0002057,1.89e-10,42;CL:0000542,2.44e-10,53;CL:0000051,2.44e-10,53;CL:0000557,3.85e-09,67;CL:0002009,4.35e-09,61;CL:0002393,9.93e-09,9;CL:0002397,9.93e-09,9;CL:0002194,3.13e-08,59;CL:0000576,3.13e-08,59;CL:0000040,3.13e-08,59;CL:0000559,3.13e-08,59;CL:0000473,4.26e-08,48;CL:0000234,4.26e-08,48;CL:0000839,4.93e-08,66;CL:0000624,5.17e-08,6;CL:0000094,1.79e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000051;9.47e-08;53!CL:0002057;2.57e-07;42 | |||
|ontology_enrichment_disease=DOID:0050687!9.59e-14!143;DOID:305!5.56e-13!106;DOID:162!6.57e-09!235;DOID:14566!7.12e-09!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.15e-09,106;DOID:0050687,3.41e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.36e-13!102;UBERON:0003061!1.36e-13!102;UBERON:0002193!1.27e-10!112;UBERON:0002371!3.28e-09!80;UBERON:0001474!1.18e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.26e-07;15!UBERON:0000179;3.26e-07;15!UBERON:0000463;3.26e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.34e-12,98;UBERON:0003061,9.34e-12,98;UBERON:0002193,2.61e-09,108;UBERON:0002371,1.76e-07,76;UBERON:0000178,2.36e-07,15;UBERON:0000179,2.36e-07,15;UBERON:0000463,2.36e-07,15 | |||
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| ||
|short_description=p@chr20:42837055..42837068,- | |||
}} | }} |
Latest revision as of 14:10, 28 July 2015
Short description: | p@chr20:42837055..42837068, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:42837055..42837068, - |
Coexpression cluster: | C306_CD4_CD8_Neutrophils_Natural_CD19_CD14_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.31e-25 | 136 |
nongranular leukocyte | 8.90e-20 | 115 |
hematopoietic lineage restricted progenitor cell | 8.67e-19 | 120 |
hematopoietic stem cell | 4.25e-18 | 168 |
hematopoietic cell | 2.73e-17 | 177 |
hematopoietic oligopotent progenitor cell | 2.00e-15 | 161 |
hematopoietic multipotent progenitor cell | 2.00e-15 | 161 |
myeloid leukocyte | 1.12e-12 | 72 |
lymphoid lineage restricted progenitor cell | 9.90e-11 | 52 |
classical monocyte | 1.89e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.89e-10 | 42 |
lymphocyte | 2.44e-10 | 53 |
common lymphoid progenitor | 2.44e-10 | 53 |
granulocyte monocyte progenitor cell | 3.85e-09 | 67 |
macrophage dendritic cell progenitor | 4.35e-09 | 61 |
intermediate monocyte | 9.93e-09 | 9 |
CD14-positive, CD16-positive monocyte | 9.93e-09 | 9 |
monopoietic cell | 3.13e-08 | 59 |
monocyte | 3.13e-08 | 59 |
monoblast | 3.13e-08 | 59 |
promonocyte | 3.13e-08 | 59 |
defensive cell | 4.26e-08 | 48 |
phagocyte | 4.26e-08 | 48 |
myeloid lineage restricted progenitor cell | 4.93e-08 | 66 |
CD4-positive, alpha-beta T cell | 5.17e-08 | 6 |
granulocyte | 1.79e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.34e-12 | 98 |
blood island | 9.34e-12 | 98 |
hemolymphoid system | 2.61e-09 | 108 |
bone marrow | 1.76e-07 | 76 |
blood | 2.36e-07 | 15 |
haemolymphatic fluid | 2.36e-07 | 15 |
organism substance | 2.36e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.15e-09 | 106 |
cell type cancer | 3.41e-08 | 143 |