FFCP PHASE1:Hg19::chr2:20133198..20133223,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:20133198..20133223,- | |||
|coexpression_cluster_id=C619 | |||
|description=CAGE_peak_at_chr2:20133198..20133223,- | |description=CAGE_peak_at_chr2:20133198..20133223,- | ||
|id=chr2:20133198..20133223,- | |id=chr2:20133198..20133223,- | ||
|ontology_enrichment_celltype=CL:0000066!2.68e-30!254;CL:0002139!4.29e-18!24;CL:0002076!3.80e-15!43;CL:0000076!1.23e-14!62;CL:0000220!2.84e-14!246;CL:0002321!5.83e-14!248;CL:0000115!3.62e-13!35;CL:0002368!4.67e-13!13;CL:0000223!3.83e-12!59;CL:0000213!6.92e-12!57;CL:0000215!6.92e-12!57;CL:0000071!8.11e-12!18;CL:0002546!8.11e-12!18;CL:0002078!2.99e-11!44;CL:0002202!6.42e-09!9;CL:0002632!6.42e-09!9;CL:0005020!3.02e-08!6;CL:0002138!3.02e-08!6;CL:0005022!3.02e-08!6;CL:0000082!1.86e-07!19 | |ontology_enrichment_celltype=CL:0000066!2.68e-30!254;CL:0002139!4.29e-18!24;CL:0002076!3.80e-15!43;CL:0000076!1.23e-14!62;CL:0000220!2.84e-14!246;CL:0002321!5.83e-14!248;CL:0000115!3.62e-13!35;CL:0002368!4.67e-13!13;CL:0000223!3.83e-12!59;CL:0000213!6.92e-12!57;CL:0000215!6.92e-12!57;CL:0000071!8.11e-12!18;CL:0002546!8.11e-12!18;CL:0002078!2.99e-11!44;CL:0002202!6.42e-09!9;CL:0002632!6.42e-09!9;CL:0005020!3.02e-08!6;CL:0002138!3.02e-08!6;CL:0005022!3.02e-08!6;CL:0000082!1.86e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002368;2.53e-16;13!CL:0002202;6.89e-11;9!CL:0002632;6.89e-11;9!CL:0002138;8.56e-10;6!CL:0002076;1.96e-09;42!CL:0002328;5.72e-09;3!CL:0000307;5.72e-09;3!CL:0002139;8.56e-09;24!CL:0000115;1.95e-08;36!CL:0000082;7.30e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.14e-18,253;CL:0002368,1.64e-16,13;CL:0002076,1.08e-12,42;CL:0002202,5.61e-11,9;CL:0002632,5.61e-11,9;CL:0000115,7.06e-10,36;CL:0005020,8.46e-10,6;CL:0002138,8.46e-10,6;CL:0005022,8.46e-10,6;CL:0002328,3.98e-09,3;CL:0000068,5.97e-09,3;CL:0000069,5.97e-09,3;CL:0000307,5.97e-09,3;CL:0000377,5.97e-09,3;CL:0002139,7.55e-09,24;CL:0000223,1.03e-08,58;CL:0000082,6.02e-08,19;CL:0002078,1.15e-07,45 | |||
|ontology_enrichment_development_v019=CL:0005022;8.56e-10;6!UBERON:0009847;2.98e-09;3!UBERON:0003353;2.98e-09;3!CL:0000377;5.72e-09;3 | |||
|ontology_enrichment_disease=DOID:305!1.48e-08!106;DOID:3908!5.87e-07!5 | |ontology_enrichment_disease=DOID:305!1.48e-08!106;DOID:3908!5.87e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:4556;5.72e-09;3!DOID:1749;2.67e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:4556,4.88e-09,3;DOID:1749,2.07e-07,14;DOID:305,3.04e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000487!1.49e-13!22;UBERON:0001986!8.11e-12!18;UBERON:0004638!8.11e-12!18;UBERON:0004852!8.11e-12!18;UBERON:0006914!2.99e-11!25;UBERON:0005153!4.67e-11!37;UBERON:0005911!2.89e-10!82;UBERON:0004119!2.48e-09!169;UBERON:0000925!2.48e-09!169;UBERON:0006595!2.48e-09!169;UBERON:0000065!1.57e-08!53;UBERON:0005178!1.73e-08!34;UBERON:0002224!1.73e-08!34;UBERON:0005181!4.35e-08!35;UBERON:0000119!5.10e-08!312;UBERON:0001007!8.20e-08!155;UBERON:0001555!8.20e-08!155;UBERON:0007026!8.20e-08!155;UBERON:0001004!1.07e-07!72;UBERON:0005157!1.18e-07!51;UBERON:0000464!1.31e-07!104;UBERON:0007196!1.41e-07!14;UBERON:0001558!1.41e-07!14;UBERON:0004807!1.45e-07!28;UBERON:0000483!1.73e-07!309;UBERON:0004802!1.86e-07!19;UBERON:0000115!1.86e-07!19;UBERON:0006554!3.07e-07!44;UBERON:0004921!5.01e-07!129;UBERON:0004185!5.01e-07!129;UBERON:0008947!5.37e-07!38;UBERON:0003258!5.37e-07!38;UBERON:0004111!5.68e-07!241;UBERON:0001008!5.99e-07!45;UBERON:0002048!6.39e-07!22;UBERON:0000117!6.39e-07!22;UBERON:0000171!6.39e-07!22;UBERON:0000170!6.39e-07!22;UBERON:0005597!6.39e-07!22;UBERON:0000118!6.39e-07!22;UBERON:0005177!6.62e-07!107 | |ontology_enrichment_uberon=UBERON:0000487!1.49e-13!22;UBERON:0001986!8.11e-12!18;UBERON:0004638!8.11e-12!18;UBERON:0004852!8.11e-12!18;UBERON:0006914!2.99e-11!25;UBERON:0005153!4.67e-11!37;UBERON:0005911!2.89e-10!82;UBERON:0004119!2.48e-09!169;UBERON:0000925!2.48e-09!169;UBERON:0006595!2.48e-09!169;UBERON:0000065!1.57e-08!53;UBERON:0005178!1.73e-08!34;UBERON:0002224!1.73e-08!34;UBERON:0005181!4.35e-08!35;UBERON:0000119!5.10e-08!312;UBERON:0001007!8.20e-08!155;UBERON:0001555!8.20e-08!155;UBERON:0007026!8.20e-08!155;UBERON:0001004!1.07e-07!72;UBERON:0005157!1.18e-07!51;UBERON:0000464!1.31e-07!104;UBERON:0007196!1.41e-07!14;UBERON:0001558!1.41e-07!14;UBERON:0004807!1.45e-07!28;UBERON:0000483!1.73e-07!309;UBERON:0004802!1.86e-07!19;UBERON:0000115!1.86e-07!19;UBERON:0006554!3.07e-07!44;UBERON:0004921!5.01e-07!129;UBERON:0004185!5.01e-07!129;UBERON:0008947!5.37e-07!38;UBERON:0003258!5.37e-07!38;UBERON:0004111!5.68e-07!241;UBERON:0001008!5.99e-07!45;UBERON:0002048!6.39e-07!22;UBERON:0000117!6.39e-07!22;UBERON:0000171!6.39e-07!22;UBERON:0000170!6.39e-07!22;UBERON:0005597!6.39e-07!22;UBERON:0000118!6.39e-07!22;UBERON:0005177!6.62e-07!107 | ||
|ontology_enrichment_uberon_v019=UBERON:0004807;1.85e-09;22!UBERON:0004815;5.72e-09;3!UBERON:0002031;5.72e-09;3!UBERON:0004802;7.30e-08;19!UBERON:0000115;7.30e-08;19!UBERON:0005181;1.37e-07;35!UBERON:0005178;1.48e-07;34!UBERON:0002224;1.48e-07;34!UBERON:0001473;1.86e-07;8!UBERON:0004536;1.86e-07;8!UBERON:0006558;1.86e-07;8!UBERON:0004913;2.42e-07;1!UBERON:0003703;2.42e-07;1!UBERON:0001174;2.42e-07;1!UBERON:0004914;2.42e-07;1!UBERON:0005911;3.57e-07;36!UBERON:0000065;4.80e-07;44!UBERON:0002394;6.24e-07;4!UBERON:0003928;6.24e-07;4!UBERON:0002048;9.34e-07;22!UBERON:0000117;9.34e-07;22!UBERON:0000171;9.34e-07;22!UBERON:0000170;9.34e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005911,6.42e-10,82;UBERON:0005153,2.17e-09,37;UBERON:0004815,3.98e-09,3;UBERON:0002031,3.98e-09,3;UBERON:0004119,1.82e-08,160;UBERON:0000925,1.82e-08,160;UBERON:0006595,1.82e-08,160;UBERON:0005178,5.66e-08,34;UBERON:0002224,5.66e-08,34;UBERON:0004802,6.02e-08,19;UBERON:0000115,6.02e-08,19;UBERON:0001004,6.29e-08,74;UBERON:0000065,9.08e-08,54;UBERON:0005181,1.01e-07,35;UBERON:0004913,1.72e-07,1;UBERON:0003703,1.72e-07,1;UBERON:0001174,1.72e-07,1;UBERON:0004914,1.72e-07,1;UBERON:0001473,1.84e-07,8;UBERON:0004536,1.84e-07,8;UBERON:0006558,1.84e-07,8;UBERON:0004807,2.50e-07,28;UBERON:0005157,3.80e-07,47;UBERON:0008947,4.82e-07,38;UBERON:0003258,4.82e-07,38;UBERON:0002048,7.93e-07,22;UBERON:0000117,7.93e-07,22;UBERON:0000171,7.93e-07,22;UBERON:0000170,7.93e-07,22;UBERON:0005597,7.93e-07,22;UBERON:0000118,7.93e-07,22 | |||
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| ||
|short_description=p@chr2:20133198..20133223,- | |short_description=p@chr2:20133198..20133223,- | ||
}} | }} |
Latest revision as of 04:51, 29 July 2015
Short description: | p@chr2:20133198..20133223, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20133198..20133223, - |
Coexpression cluster: | C619_squamous_bile_Small_Mammary_mucinous_Tracheal_giant |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.14e-18 | 253 |
respiratory epithelial cell | 1.64e-16 | 13 |
endo-epithelial cell | 1.08e-12 | 42 |
epithelial cell of tracheobronchial tree | 5.61e-11 | 9 |
epithelial cell of lower respiratory tract | 5.61e-11 | 9 |
endothelial cell | 7.06e-10 | 36 |
lymphangioblast | 8.46e-10 | 6 |
endothelial cell of lymphatic vessel | 8.46e-10 | 6 |
vascular lymphangioblast | 8.46e-10 | 6 |
bronchial epithelial cell | 3.98e-09 | 3 |
duct epithelial cell | 5.97e-09 | 3 |
branched duct epithelial cell | 5.97e-09 | 3 |
tracheal epithelial cell | 5.97e-09 | 3 |
tracheoblast | 5.97e-09 | 3 |
endothelial cell of vascular tree | 7.55e-09 | 24 |
endodermal cell | 1.03e-08 | 58 |
epithelial cell of lung | 6.02e-08 | 19 |
meso-epithelial cell | 1.15e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
endo-epithelium | 6.42e-10 | 82 |
epithelial bud | 2.17e-09 | 37 |
lower respiratory tract epithelium | 3.98e-09 | 3 |
epithelium of bronchus | 3.98e-09 | 3 |
endoderm-derived structure | 1.82e-08 | 160 |
endoderm | 1.82e-08 | 160 |
presumptive endoderm | 1.82e-08 | 160 |
thoracic cavity element | 5.66e-08 | 34 |
thoracic cavity | 5.66e-08 | 34 |
respiratory tract epithelium | 6.02e-08 | 19 |
lung epithelium | 6.02e-08 | 19 |
respiratory system | 6.29e-08 | 74 |
respiratory tract | 9.08e-08 | 54 |
thoracic segment organ | 1.01e-07 | 35 |
hepatopancreatic ampulla | 1.72e-07 | 1 |
extrahepatic bile duct | 1.72e-07 | 1 |
common bile duct | 1.72e-07 | 1 |
duodenal papilla | 1.72e-07 | 1 |
lymphatic vessel | 1.84e-07 | 8 |
lymph vasculature | 1.84e-07 | 8 |
lymphatic part of lymphoid system | 1.84e-07 | 8 |
respiratory system epithelium | 2.50e-07 | 28 |
epithelial fold | 3.80e-07 | 47 |
respiratory primordium | 4.82e-07 | 38 |
endoderm of foregut | 4.82e-07 | 38 |
lung | 7.93e-07 | 22 |
respiratory tube | 7.93e-07 | 22 |
respiration organ | 7.93e-07 | 22 |
pair of lungs | 7.93e-07 | 22 |
lung primordium | 7.93e-07 | 22 |
lung bud | 7.93e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
lung large cell carcinoma | 4.88e-09 | 3 |
squamous cell carcinoma | 2.07e-07 | 14 |
carcinoma | 3.04e-07 | 106 |