FFCP PHASE1:Hg19::chr2:208104402..208104413,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=28bp_to_ENST00000440326_5end | |association_with_transcript=28bp_to_ENST00000440326_5end | ||
|cluster_id=chr2:208104402..208104413,+ | |||
|coexpression_cluster_id=C1890 | |coexpression_cluster_id=C1890 | ||
|description=CAGE_peak_5_at_ENST00000440326_5end | |description=CAGE_peak_5_at_ENST00000440326_5end | ||
|id=chr2:208104402..208104413,+ | |id=chr2:208104402..208104413,+ | ||
|ontology_enrichment_celltype=CL:0000548!1.24e-15!679;CL:0000004!1.24e-15!679;CL:0000255!1.24e-15!679;CL:0000012!2.62e-15!682;CL:0000144!4.85e-15!625;CL:0002371!3.66e-13!591;CL:0000003!1.83e-12!722;CL:0002368!1.04e-09!13;CL:0000063!1.89e-09!578;CL:0000055!8.29e-09!180;CL:0000220!1.46e-08!246;CL:0002076!2.53e-08!43;CL:0002321!2.53e-08!248;CL:0002159!3.14e-08!13;CL:0000057!9.39e-08!75 | |ontology_enrichment_celltype=CL:0000548!1.24e-15!679;CL:0000004!1.24e-15!679;CL:0000255!1.24e-15!679;CL:0000012!2.62e-15!682;CL:0000144!4.85e-15!625;CL:0002371!3.66e-13!591;CL:0000003!1.83e-12!722;CL:0002368!1.04e-09!13;CL:0000063!1.89e-09!578;CL:0000055!8.29e-09!180;CL:0000220!1.46e-08!246;CL:0002076!2.53e-08!43;CL:0002321!2.53e-08!248;CL:0002159!3.14e-08!13;CL:0000057!9.39e-08!75 | ||
|ontology_enrichment_celltype_v019=CL:0002368;1.18e-18;13!CL:0002159;3.01e-14;14!CL:0002166;4.50e-14;3!CL:0002621;5.77e-13;3!CL:0002328;1.83e-12;3!CL:0002076;6.39e-12;42!CL:0002202;7.58e-11;9!CL:0002632;7.58e-11;9!CL:0002327;7.73e-10;4!CL:0000312;3.09e-08;5!CL:0000362;1.11e-07;9!CL:0000240;6.34e-07;6!CL:0000311;6.34e-07;6!CL:0000079;6.34e-07;6!CL:0000237;6.34e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.47e-18,13;CL:0002159,3.12e-14,14;CL:0002166,4.14e-14,3;CL:0002076,1.28e-13,42;CL:0002621,3.12e-13,3;CL:0000066,7.71e-13,253;CL:0002328,2.02e-12,3;CL:0002202,1.02e-10,9;CL:0002632,1.02e-10,9;CL:0000223,1.20e-10,58;CL:0002327,4.48e-10,4;CL:0000312,3.25e-08,5;CL:0000362,1.18e-07,9;CL:0000240,6.61e-07,6;CL:0000311,6.61e-07,6;CL:0000079,6.61e-07,6;CL:0000237,6.61e-07,6;CL:0000036,6.61e-07,6;CL:0000357,6.61e-07,6;CL:0000114,6.61e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000357;6.34e-07;6!CL:0000114;6.34e-07;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.85e-07!95;UBERON:0002199!4.11e-07!45;UBERON:0002416!4.11e-07!45 | |ontology_enrichment_uberon=UBERON:0003102!1.85e-07!95;UBERON:0002199!4.11e-07!45;UBERON:0002416!4.11e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0001949;5.77e-13;3!UBERON:0004815;1.83e-12;3!UBERON:0002031;1.83e-12;3!UBERON:0000486;7.82e-12;12!UBERON:0001708;1.17e-10;4!UBERON:0008895;1.17e-10;4!UBERON:0001911;7.73e-10;4!UBERON:0011159;1.33e-08;5!UBERON:0003350;2.08e-08;8!UBERON:0000365;5.08e-08;5!UBERON:0005911;1.13e-07;36!UBERON:0002185;1.17e-07;5!UBERON:0010371;3.34e-07;31!UBERON:0005910;9.54e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,3.12e-13,3;UBERON:0004815,2.02e-12,3;UBERON:0002031,2.02e-12,3;UBERON:0001708,1.10e-10,4;UBERON:0008895,1.10e-10,4;UBERON:0001911,4.48e-10,4;UBERON:0005333,4.48e-10,4;UBERON:0008425,4.48e-10,4;UBERON:0005311,4.48e-10,4;UBERON:0011159,1.27e-08,5;UBERON:0003350,1.66e-08,8;UBERON:0000076,1.76e-08,8;UBERON:0000365,7.03e-08,5;UBERON:0002185,1.24e-07,5;UBERON:0010188,3.04e-07,6;UBERON:0002539,3.04e-07,6;UBERON:0008816,3.04e-07,6 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.422863212287913,1.0007329835313,0.446961094427288,0,0,2.52687949370732,0,0.491467873003018,1.39560233594486,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,1.204823675113,1.10926203050036,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0,0.822335776043652,0,0.863077176966451,0.768482119587302,0.709446689665756,0,0,0,0.188242339542605,0,0.224723484445085,0.612167784741805,0,0,0,0,0,0.870627715885752,1.70215567407342,0,0.251248665256743,1.0429658368404,0.65156653411535,2.42159801053347,0.736555271975129,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,0,0.795285947051099,0,0.189069634328136,0,0.087834785693126,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0.573673241497627,0.354668382198357,0,0,0.49333509683432,0.311211035399766,0,0.653847612453835,0,0,0.234321431833797,0.624320153660641,0,0,0.352303495931295,0.485618833104395,1.26405726032024,0,0,0,0,0,2.73048408581408,0,0,0.125118519871964,0,0,0.30648779579902,0,0.453728732640084,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.515262646192195,0.257640540045629,0.18611685633159,0,0.194874010322397,0,0,0.323292113637624,0,0.302256294682921,0.67824236924195,2.89891279744945,3.27295344709002,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330881918197182,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.857839051492628,5.92651541206578,2.24803506515239,2.31216636546751,0.740707561268237,0,0,1.44331342025273,0,0.469634776943287,0,0,0,0,0,0,0,0,5.62403003920662,4.53551746136921,4.53680311175637,2.7763142037883,3.77824120068151,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0.43596006883328,0.8800594298514,0.517086863031111,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,5.21177894869976,0,0,3.01439377059586,0,0.499864955910285,0,0,0,0.718874566474748,0,0,0.289562613335158,0.61642896765115,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0,0.749007023947182,0,0,0.24538298343828,0,0,0.415941723061614,0.535286966391485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0,0,0.771048469013278,0.532685175939381,0.739144404124282,0.519254429183621,0.464841513839837,0,3.20810352485256,0.460404944679482,0,0.182091168006717,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.183138929636687,0,2.29706215198469,0.650060246036521,0,0.193341436584244,0.616194468458578,0.460511024178389,0.689182862422653,1.28904293841928,0.145016693914229,0.596586391912706,0,3.47098322258054,1.34533047155574,3.06270509987002,0.6069466851333,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0,0.179872457583315,0.54907405947211,0.117812402345686,0.202182481573316,0,0,0.48763373908959,0.243713489631284,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.329294892959902,0,0,2.02066436723575,0.670302275535787,1.08890984861323,0,2.15252686335615,0,0.886860307073351,2.06751060186264,0,0,0,0,0,0.648473311192717,0.540031437238115,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0.622079175323615,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.300646838828985,0,0,0.330991955875499,0,0,0,0,0,0.391969589657511,3.22119064347489,0,0,0,0,0,0,0,0,1.23337732182076,0.19871461170299,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0.305994652908965,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46838880439127,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0,0.895528817321244,1.16856654923612,2.77402930751307,0,0,0.889811221596536,0.228840068396924,0.151230923763239,0.310874401165561,0,0.955780602982214,0,0.465788870628778,0,0,0,0.150257608997218,3.04644169735036,0.406870733204662,0.181848659202559,1.07410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0.680117776536817,0.694567422971502,0.734210113519403,1.07453304648892,0,0.219284049578707,1.23682402162117,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,4.2203518955441,0,0.917142992608395,0.808679663052368,0,0.690359926060101,0.198916222116275,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236664001461131,0.340853619036631,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0.71421575442263,1.05868461514708,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,2.19788825249631,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.363356758541113,0.214100523890983,0.422863212287913,1.0007329835313,0.446961094427288,0,0,2.52687949370732,0,0.491467873003018,1.39560233594486,0,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.75826367343678,1.204823675113,1.10926203050036,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0,0.822335776043652,0,0.863077176966451,0.768482119587302,0.709446689665756,0,0,0,0.188242339542605,0,0.224723484445085,0.612167784741805,0,0,0,0,0,0.870627715885752,1.70215567407342,0,0.251248665256743,1.0429658368404,0.65156653411535,2.42159801053347,0.736555271975129,0.949387162322653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0.50133791063589,0,0.795285947051099,0,0.189069634328136,0,0.087834785693126,0,0.728590576585084,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0.573673241497627,0.354668382198357,0,0,0.49333509683432,0.311211035399766,0,0.653847612453835,0,0,0.234321431833797,0.624320153660641,0,0,0.352303495931295,0.485618833104395,1.26405726032024,0,0,0,0,0,2.73048408581408,0,0,0.125118519871964,0,0,0.30648779579902,0,0.453728732640084,0.179389635688862,0.213557388818567,0.211931901159562,0.300091096084402,0.515262646192195,0.257640540045629,0.18611685633159,0,0.194874010322397,0,0,0.323292113637624,0,0.302256294682921,0.67824236924195,2.89891279744945,3.27295344709002,1.43402297694502,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330881918197182,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.857839051492628,5.92651541206578,2.24803506515239,2.31216636546751,0.740707561268237,0,0,1.44331342025273,0,0.469634776943287,0,0,0,0,0,0,0,0,5.62403003920662,4.53551746136921,4.53680311175637,2.7763142037883,3.77824120068151,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0.43596006883328,0.8800594298514,0.517086863031111,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,5.21177894869976,0,0,3.01439377059586,0,0.499864955910285,0,0,0,0.718874566474748,0,0,0.289562613335158,0.61642896765115,0.537182889719687,0,0,0,0,0,0,0,0.167516265334349,0,0.749007023947182,0,0,0.24538298343828,0,0,0.415941723061614,0.535286966391485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0.306923946576125,0,0.128139149255701,0,0,0,0.771048469013278,0.532685175939381,0.739144404124282,0.519254429183621,0.464841513839837,0,3.20810352485256,0.460404944679482,0,0.182091168006717,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325378394664303,0,0.183138929636687,0,2.29706215198469,0.650060246036521,0,0.193341436584244,0.616194468458578,0.460511024178389,0.689182862422653,1.28904293841928,0.145016693914229,0.596586391912706,0,3.47098322258054,1.34533047155574,3.06270509987002,0.6069466851333,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0,0.316379424718726,0.190630193923825,0.255897791311334,0,0,0,0.179872457583315,0.54907405947211,0.117812402345686,0.202182481573316,0,0,0.48763373908959,0.243713489631284,0,0.136499911407986,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0.329294892959902,0,0,2.02066436723575,0.670302275535787,1.08890984861323,0,2.15252686335615,0,0.886860307073351,2.06751060186264,0,0,0,0,0,0.648473311192717,0.540031437238115,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0.622079175323615,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0.300646838828985,0,0,0.330991955875499,0,0,0,0,0,0.391969589657511,3.22119064347489,0,0,0,0,0,0,0,0,1.23337732182076,0.19871461170299,0,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0.305994652908965,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,4.46838880439127,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0.235265819698172,0,0,0.895528817321244,1.16856654923612,2.77402930751307,0,0,0.889811221596536,0.228840068396924,0.151230923763239,0.310874401165561,0,0.955780602982214,0,0.465788870628778,0,0,0,0.150257608997218,3.04644169735036,0.406870733204662,0.181848659202559,1.07410557042488,0,0.398095888698616,0.400027764663154,0,0,0,0,0,0,0.680117776536817,0.694567422971502,0.734210113519403,1.07453304648892,0,0.219284049578707,1.23682402162117,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0,0,0,0,0,0,0,0,4.2203518955441,0,0.917142992608395,0.808679663052368,0,0.690359926060101,0.198916222116275,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236664001461131,0.340853619036631,0,0,0.31020638566432,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0.71421575442263,1.05868461514708,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,2.19788825249631,0,0,0,0,0,0,0,0,0 | ||
|short_description=p5@ENST00000440326 | |short_description=p5@ENST00000440326 | ||
}} | }} |
Latest revision as of 05:28, 29 July 2015
Short description: | p5@ENST00000440326 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_ENST00000440326_5end |
Coexpression cluster: | C1890_Small_nasal_Mammary_Urothelial_Keratinocyte_squamous_oral |
Association with transcript: | 28bp_to_ENST00000440326_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.47e-18 | 13 |
general ecto-epithelial cell | 3.12e-14 | 14 |
epithelial cell of Malassez | 4.14e-14 | 3 |
endo-epithelial cell | 1.28e-13 | 42 |
gingival epithelial cell | 3.12e-13 | 3 |
epithelial cell | 7.71e-13 | 253 |
bronchial epithelial cell | 2.02e-12 | 3 |
epithelial cell of tracheobronchial tree | 1.02e-10 | 9 |
epithelial cell of lower respiratory tract | 1.02e-10 | 9 |
endodermal cell | 1.20e-10 | 58 |
mammary gland epithelial cell | 4.48e-10 | 4 |
keratinocyte | 3.25e-08 | 5 |
epidermal cell | 1.18e-07 | 9 |
stratified squamous epithelial cell | 6.61e-07 | 6 |
keratin accumulating cell | 6.61e-07 | 6 |
stratified epithelial cell | 6.61e-07 | 6 |
keratinizing barrier epithelial cell | 6.61e-07 | 6 |
epithelial fate stem cell | 6.61e-07 | 6 |
stratified epithelial stem cell | 6.61e-07 | 6 |
surface ectodermal cell | 6.61e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 3.12e-13 | 3 |
lower respiratory tract epithelium | 2.02e-12 | 3 |
epithelium of bronchus | 2.02e-12 | 3 |
jaw skeleton | 1.10e-10 | 4 |
splanchnocranium | 1.10e-10 | 4 |
mammary gland | 4.48e-10 | 4 |
mammary bud | 4.48e-10 | 4 |
mammary ridge | 4.48e-10 | 4 |
mammary placode | 4.48e-10 | 4 |
primary subdivision of cranial skeletal system | 1.27e-08 | 5 |
epithelium of mucosa | 1.66e-08 | 8 |
external ectoderm | 1.76e-08 | 8 |
urothelium | 7.03e-08 | 5 |
bronchus | 1.24e-07 | 5 |
protuberance | 3.04e-07 | 6 |
pharyngeal arch | 3.04e-07 | 6 |
embryonic head | 3.04e-07 | 6 |