FFCP PHASE1:Hg19::chr2:214012337..214012351,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:214012337..214012351,- | |||
|coexpression_cluster_id=C103 | |||
|description=CAGE_peak_at_chr2:214012337..214012351,- | |||
|id=chr2:214012337..214012351,- | |||
|ontology_enrichment_celltype=CL:0000791!1.66e-28!18;CL:0000789!1.66e-28!18;CL:0002420!1.66e-28!18;CL:0002419!1.66e-28!18;CL:0000790!1.66e-28!18;CL:0000542!2.49e-26!53;CL:0000051!2.49e-26!53;CL:0000838!4.79e-25!52;CL:0000084!1.20e-24!25;CL:0000827!1.20e-24!25;CL:0000625!1.28e-18!11;CL:0000037!4.10e-16!172;CL:0000566!4.10e-16!172;CL:0000738!5.66e-15!140;CL:0000988!1.59e-14!182;CL:0002032!1.12e-13!165;CL:0000837!1.12e-13!165;CL:0002087!6.45e-13!119;CL:0002031!2.65e-12!124;CL:0000624!2.24e-09!6;CL:0000623!1.86e-07!3;CL:0000825!1.86e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000791;9.02e-24;18!CL:0000789;9.02e-24;18!CL:0002419;9.02e-24;18!CL:0000084;4.33e-22;25!CL:0000815;2.07e-19;2!CL:0000792;2.07e-19;2!CL:0002677;2.07e-19;2!CL:0000624;3.21e-14;6!CL:0000898;2.88e-13;3!CL:0000623;1.00e-12;3!CL:0002127;8.14e-11;1!CL:0000911;8.14e-11;1!CL:0000814;8.14e-11;1!CL:0000542;3.54e-08;53!CL:0000625;8.82e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,9.84e-24,18;CL:0000789,9.84e-24,18;CL:0002420,9.84e-24,18;CL:0002419,9.84e-24,18;CL:0000790,9.84e-24,18;CL:0000084,4.65e-22,25;CL:0000827,4.65e-22,25;CL:0000815,2.17e-19,2;CL:0000792,2.17e-19,2;CL:0002677,2.17e-19,2;CL:0000838,9.69e-16,52;CL:0000542,2.05e-15,53;CL:0000051,2.05e-15,53;CL:0000624,3.60e-14,6;CL:0000898,2.97e-13,3;CL:0000623,1.00e-12,3;CL:0000825,1.00e-12,3;CL:0002127,8.14e-11,1;CL:0000914,8.14e-11,1;CL:0000911,8.14e-11,1;CL:0000814,8.14e-11,1;CL:0002042,8.14e-11,1;CL:0002039,8.14e-11,1;CL:0002040,8.14e-11,1;CL:0002041,8.14e-11,1;CL:0000625,8.82e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;9.02e-24;18!CL:0000051;3.54e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.71e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.36e-19;2!UBERON:0005058;1.36e-19;2!UBERON:0009113;1.36e-19;2!UBERON:0004177;2.19e-08;5!UBERON:0005057;2.19e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.24e-21,4;UBERON:0005058,1.24e-21,4;UBERON:0009113,1.24e-21,4;UBERON:0003295,1.24e-21,4;UBERON:0005562,1.24e-21,4;UBERON:0003351,1.26e-14,6;UBERON:0004177,1.29e-12,7;UBERON:0005057,1.29e-12,7;UBERON:0000974,5.53e-09,10;UBERON:0003408,5.53e-09,10;UBERON:0001042,5.53e-09,10;UBERON:0009145,5.53e-09,10;UBERON:0006562,3.28e-08,11;UBERON:0009722,3.28e-08,11;UBERON:0007690,3.28e-08,11 | |||
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| ||
|short_description=p@chr2:214012337..214012351,- | |||
}} | }} |
Latest revision as of 05:56, 29 July 2015
Short description: | p@chr2:214012337..214012351, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:214012337..214012351, - |
Coexpression cluster: | C103_CD4_CD8_Natural_Peripheral_Whole_Neutrophils_Basophils |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 9.84e-24 | 18 |
alpha-beta T cell | 9.84e-24 | 18 |
immature T cell | 9.84e-24 | 18 |
mature T cell | 9.84e-24 | 18 |
immature alpha-beta T cell | 9.84e-24 | 18 |
T cell | 4.65e-22 | 25 |
pro-T cell | 4.65e-22 | 25 |
regulatory T cell | 2.17e-19 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.17e-19 | 2 |
naive regulatory T cell | 2.17e-19 | 2 |
lymphoid lineage restricted progenitor cell | 9.69e-16 | 52 |
lymphocyte | 2.05e-15 | 53 |
common lymphoid progenitor | 2.05e-15 | 53 |
CD4-positive, alpha-beta T cell | 3.60e-14 | 6 |
naive T cell | 2.97e-13 | 3 |
natural killer cell | 1.00e-12 | 3 |
pro-NK cell | 1.00e-12 | 3 |
innate effector T cell | 8.14e-11 | 1 |
immature NK T cell | 8.14e-11 | 1 |
effector T cell | 8.14e-11 | 1 |
mature NK T cell | 8.14e-11 | 1 |
immature NK T cell stage IV | 8.14e-11 | 1 |
immature NK T cell stage I | 8.14e-11 | 1 |
immature NK T cell stage II | 8.14e-11 | 1 |
immature NK T cell stage III | 8.14e-11 | 1 |
CD8-positive, alpha-beta T cell | 8.82e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.24e-21 | 4 |
hemolymphoid system gland | 1.24e-21 | 4 |
thymic region | 1.24e-21 | 4 |
pharyngeal gland | 1.24e-21 | 4 |
thymus primordium | 1.24e-21 | 4 |
pharyngeal epithelium | 1.26e-14 | 6 |
hemopoietic organ | 1.29e-12 | 7 |
immune organ | 1.29e-12 | 7 |
neck | 5.53e-09 | 10 |
gland of gut | 5.53e-09 | 10 |
chordate pharynx | 5.53e-09 | 10 |
pharyngeal region of foregut | 5.53e-09 | 10 |
pharynx | 3.28e-08 | 11 |
entire pharyngeal arch endoderm | 3.28e-08 | 11 |
early pharyngeal endoderm | 3.28e-08 | 11 |