FFCP PHASE1:Hg19::chr2:56144804..56144841,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:56144804..56144841,+ | |||
|coexpression_cluster_id=C395 | |||
|description=CAGE_peak_at_chr2:56144804..56144841,+ | |description=CAGE_peak_at_chr2:56144804..56144841,+ | ||
|id=chr2:56144804..56144841,+ | |id=chr2:56144804..56144841,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.58e-19!119;CL:0000055!3.09e-16!180;CL:0000057!2.33e-13!75;CL:0000213!2.49e-13!57;CL:0000215!2.49e-13!57;CL:0002139!8.00e-13!24;CL:0000220!6.34e-11!246;CL:0002321!1.61e-10!248;CL:0002078!3.03e-10!44;CL:0000071!1.09e-08!18;CL:0002546!1.09e-08!18;CL:0000115!1.26e-08!35;CL:0000680!7.17e-08!57;CL:0000056!7.17e-08!57;CL:0000355!7.17e-08!57;CL:0000076!1.07e-07!62;CL:0000187!1.24e-07!54;CL:0002494!3.87e-07!16;CL:0000183!6.56e-07!59 | |ontology_enrichment_celltype=CL:0000222!1.58e-19!119;CL:0000055!3.09e-16!180;CL:0000057!2.33e-13!75;CL:0000213!2.49e-13!57;CL:0000215!2.49e-13!57;CL:0002139!8.00e-13!24;CL:0000220!6.34e-11!246;CL:0002321!1.61e-10!248;CL:0002078!3.03e-10!44;CL:0000071!1.09e-08!18;CL:0002546!1.09e-08!18;CL:0000115!1.26e-08!35;CL:0000680!7.17e-08!57;CL:0000056!7.17e-08!57;CL:0000355!7.17e-08!57;CL:0000076!1.07e-07!62;CL:0000187!1.24e-07!54;CL:0002494!3.87e-07!16;CL:0000183!6.56e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.87e-19;24!CL:0000115;1.95e-13;36!CL:0000071;1.69e-12;18!CL:0002078;3.97e-12;45!CL:0000213;5.59e-10;58!CL:0000215;5.59e-10;58!CL:0002138;5.02e-09;6!CL:0002494;1.21e-07;16!CL:0002548;2.20e-07;6!CL:0000057;8.66e-07;73 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,5.39e-22,121;CL:0002139,2.11e-19,24;CL:0000213,4.68e-18,58;CL:0000215,4.68e-18,58;CL:0000057,7.30e-17,76;CL:0002078,1.03e-16,45;CL:0000115,3.54e-16,36;CL:0000071,2.12e-12,18;CL:0002546,2.12e-12,18;CL:0002321,1.18e-10,250;CL:0005020,4.24e-09,6;CL:0002138,4.24e-09,6;CL:0005022,4.24e-09,6;CL:0002494,1.24e-07,16;CL:0002548,2.21e-07,6;CL:0000187,2.29e-07,55 | |||
|ontology_enrichment_development_v019=CL:0002546;1.69e-12;18!CL:0005022;5.02e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;4.69e-07;5!DOID:450;4.69e-07;5!DOID:66;4.69e-07;5!DOID:423;4.69e-07;5!DOID:0080000;4.69e-07;5!DOID:11722;4.69e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.33e-07,5;DOID:450,5.33e-07,5;DOID:66,5.33e-07,5;DOID:423,5.33e-07,5;DOID:0080000,5.33e-07,5;DOID:11722,5.33e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0004872!9.24e-19!84;UBERON:0002049!2.48e-16!79;UBERON:0007798!2.48e-16!79;UBERON:0003914!5.14e-15!118;UBERON:0004535!9.98e-15!110;UBERON:0000477!3.43e-14!286;UBERON:0000055!3.95e-14!69;UBERON:0001009!5.25e-14!113;UBERON:0000490!8.80e-13!138;UBERON:0001981!2.79e-12!60;UBERON:0007500!2.79e-12!60;UBERON:0004537!2.79e-12!60;UBERON:0006965!2.79e-12!60;UBERON:0000483!7.26e-12!309;UBERON:0000119!2.73e-11!312;UBERON:0000468!7.59e-11!659;UBERON:0006914!1.66e-10!25;UBERON:0001637!2.33e-09!42;UBERON:0003509!2.33e-09!42;UBERON:0004572!2.33e-09!42;UBERON:0004111!2.57e-09!241;UBERON:0000467!2.84e-09!625;UBERON:0000480!3.98e-09!626;UBERON:0000487!7.95e-09!22;UBERON:0001986!1.09e-08!18;UBERON:0004638!1.09e-08!18;UBERON:0004852!1.09e-08!18;UBERON:0000025!6.12e-08!194;UBERON:0000475!1.04e-07!365;UBERON:0002385!1.14e-07!63;UBERON:0001015!1.14e-07!63;UBERON:0000383!1.14e-07!63;UBERON:0004573!1.82e-07!33;UBERON:0004571!1.82e-07!33;UBERON:0001134!2.36e-07!61;UBERON:0002036!2.36e-07!61;UBERON:0003082!2.36e-07!61;UBERON:0005256!3.73e-07!143;UBERON:0000948!5.09e-07!24;UBERON:0005498!5.09e-07!24;UBERON:0004140!5.09e-07!24;UBERON:0009881!5.09e-07!24;UBERON:0004141!5.09e-07!24;UBERON:0003084!5.09e-07!24;UBERON:0007005!5.09e-07!24;UBERON:0004139!5.09e-07!24;UBERON:0004291!5.09e-07!24;UBERON:0002100!5.89e-07!216;UBERON:0000486!8.94e-07!82 | |ontology_enrichment_uberon=UBERON:0004872!9.24e-19!84;UBERON:0002049!2.48e-16!79;UBERON:0007798!2.48e-16!79;UBERON:0003914!5.14e-15!118;UBERON:0004535!9.98e-15!110;UBERON:0000477!3.43e-14!286;UBERON:0000055!3.95e-14!69;UBERON:0001009!5.25e-14!113;UBERON:0000490!8.80e-13!138;UBERON:0001981!2.79e-12!60;UBERON:0007500!2.79e-12!60;UBERON:0004537!2.79e-12!60;UBERON:0006965!2.79e-12!60;UBERON:0000483!7.26e-12!309;UBERON:0000119!2.73e-11!312;UBERON:0000468!7.59e-11!659;UBERON:0006914!1.66e-10!25;UBERON:0001637!2.33e-09!42;UBERON:0003509!2.33e-09!42;UBERON:0004572!2.33e-09!42;UBERON:0004111!2.57e-09!241;UBERON:0000467!2.84e-09!625;UBERON:0000480!3.98e-09!626;UBERON:0000487!7.95e-09!22;UBERON:0001986!1.09e-08!18;UBERON:0004638!1.09e-08!18;UBERON:0004852!1.09e-08!18;UBERON:0000025!6.12e-08!194;UBERON:0000475!1.04e-07!365;UBERON:0002385!1.14e-07!63;UBERON:0001015!1.14e-07!63;UBERON:0000383!1.14e-07!63;UBERON:0004573!1.82e-07!33;UBERON:0004571!1.82e-07!33;UBERON:0001134!2.36e-07!61;UBERON:0002036!2.36e-07!61;UBERON:0003082!2.36e-07!61;UBERON:0005256!3.73e-07!143;UBERON:0000948!5.09e-07!24;UBERON:0005498!5.09e-07!24;UBERON:0004140!5.09e-07!24;UBERON:0009881!5.09e-07!24;UBERON:0004141!5.09e-07!24;UBERON:0003084!5.09e-07!24;UBERON:0007005!5.09e-07!24;UBERON:0004139!5.09e-07!24;UBERON:0004291!5.09e-07!24;UBERON:0002100!5.89e-07!216;UBERON:0000486!8.94e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0006914;4.15e-14;25!UBERON:0000487;1.59e-12;22!UBERON:0004638;1.69e-12;18!UBERON:0001986;1.69e-12;18!UBERON:0004852;1.69e-12;18!UBERON:0001637;2.74e-10;42!UBERON:0003509;2.74e-10;42!UBERON:0004572;2.74e-10;42!UBERON:0000055;3.71e-10;65!UBERON:0002049;5.35e-10;75!UBERON:0007798;5.35e-10;75!UBERON:0007500;6.38e-10;56!UBERON:0001981;6.38e-10;56!UBERON:0004537;6.38e-10;56!UBERON:0004457;1.76e-09;9!UBERON:0000042;1.76e-09;9!UBERON:0000947;9.41e-09;21!UBERON:0010191;9.41e-09;21!UBERON:0000490;1.07e-08;33!UBERON:0004573;1.28e-08;33!UBERON:0004571;1.28e-08;33!UBERON:0003688;3.91e-08;6!UBERON:0002358;3.91e-08;6!UBERON:0003684;3.91e-08;6!UBERON:0001178;3.91e-08;6!UBERON:0003914;8.41e-08;74 | |||
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| ||
|short_description=p@chr2:56144804..56144841,+ | |short_description=p@chr2:56144804..56144841,+ | ||
}} | }} |
Latest revision as of 11:00, 29 July 2015
Short description: | p@chr2:56144804..56144841, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:56144804..56144841, + |
Coexpression cluster: | C395_Synoviocyte_Cardiac_Fibroblast_mesothelioma_Endothelial_Chondrocyte_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 5.39e-22 | 121 |
endothelial cell of vascular tree | 2.11e-19 | 24 |
lining cell | 4.68e-18 | 58 |
barrier cell | 4.68e-18 | 58 |
fibroblast | 7.30e-17 | 76 |
meso-epithelial cell | 1.03e-16 | 45 |
endothelial cell | 3.54e-16 | 36 |
blood vessel endothelial cell | 2.12e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.12e-12 | 18 |
embryonic cell | 1.18e-10 | 250 |
lymphangioblast | 4.24e-09 | 6 |
endothelial cell of lymphatic vessel | 4.24e-09 | 6 |
vascular lymphangioblast | 4.24e-09 | 6 |
cardiocyte | 1.24e-07 | 16 |
cardiac fibroblast | 2.21e-07 | 6 |
muscle cell | 2.29e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
vasculature | 1.31e-20 | 78 |
vascular system | 1.31e-20 | 78 |
splanchnic layer of lateral plate mesoderm | 1.89e-20 | 83 |
cardiovascular system | 4.99e-20 | 109 |
vessel | 2.27e-19 | 68 |
circulatory system | 4.96e-19 | 112 |
epithelial tube | 1.33e-18 | 117 |
epithelial tube open at both ends | 2.44e-15 | 59 |
blood vessel | 2.44e-15 | 59 |
blood vasculature | 2.44e-15 | 59 |
vascular cord | 2.44e-15 | 59 |
squamous epithelium | 5.56e-14 | 25 |
simple squamous epithelium | 2.11e-12 | 22 |
blood vessel endothelium | 2.12e-12 | 18 |
endothelium | 2.12e-12 | 18 |
cardiovascular system endothelium | 2.12e-12 | 18 |
artery | 1.36e-11 | 42 |
arterial blood vessel | 1.36e-11 | 42 |
arterial system | 1.36e-11 | 42 |
unilaminar epithelium | 2.86e-11 | 148 |
aorta | 9.19e-09 | 21 |
aortic system | 9.19e-09 | 21 |
systemic artery | 1.01e-08 | 33 |
systemic arterial system | 1.01e-08 | 33 |
omentum | 5.19e-08 | 6 |
peritoneum | 5.19e-08 | 6 |
abdominal cavity | 5.19e-08 | 6 |
visceral peritoneum | 5.19e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.33e-07 | 5 |
myotonic disease | 5.33e-07 | 5 |
muscle tissue disease | 5.33e-07 | 5 |
myopathy | 5.33e-07 | 5 |
muscular disease | 5.33e-07 | 5 |
myotonic dystrophy | 5.33e-07 | 5 |