FFCP PHASE1:Hg19::chr3:112324034..112324048,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:112324034..112324048,- | |||
|coexpression_cluster_id=C333 | |coexpression_cluster_id=C333 | ||
|description=CAGE_peak_at_chr3:112324034..112324048,- | |description=CAGE_peak_at_chr3:112324034..112324048,- | ||
|id=chr3:112324034..112324048,- | |id=chr3:112324034..112324048,- | ||
|ontology_enrichment_celltype=CL:0000055!1.11e-17!180;CL:0000057!3.55e-15!75;CL:0002620!3.29e-09!23;CL:0002334!9.47e-09!12;CL:0000136!1.55e-08!15;CL:0000680!4.79e-08!57;CL:0000056!4.79e-08!57;CL:0000355!4.79e-08!57;CL:0000048!7.00e-07!430 | |ontology_enrichment_celltype=CL:0000055!1.11e-17!180;CL:0000057!3.55e-15!75;CL:0002620!3.29e-09!23;CL:0002334!9.47e-09!12;CL:0000136!1.55e-08!15;CL:0000680!4.79e-08!57;CL:0000056!4.79e-08!57;CL:0000355!4.79e-08!57;CL:0000048!7.00e-07!430 | ||
|ontology_enrichment_celltype_v019=CL:0000136;2.11e-11;13!CL:0002620;1.47e-10;23!CL:1000306;2.22e-10;4!CL:0002547;2.22e-10;4!CL:0002334;1.94e-09;12!CL:0002579;8.50e-09;3!CL:0002615;1.44e-08;3!CL:0000135;2.16e-08;3!CL:0000388;2.16e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.11e-17,76;CL:0000136,1.22e-14,15;CL:1000306,1.50e-10,4;CL:0002547,1.50e-10,4;CL:0002620,1.61e-10,23;CL:0002334,1.44e-09,12;CL:0002579,8.54e-09,3;CL:0000135,1.68e-08,3;CL:0000388,1.68e-08,3;CL:0002615,1.81e-08,3;CL:0000048,3.19e-08,427;CL:0000723,6.72e-08,433;CL:0000034,1.75e-07,441;CL:0000134,4.11e-07,354;CL:0002320,9.85e-07,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;1.85e-08;5!DOID:450;1.85e-08;5!DOID:66;1.85e-08;5!DOID:423;1.85e-08;5!DOID:0080000;1.85e-08;5!DOID:11722;1.85e-08;5!DOID:0060084;3.26e-07;3!DOID:127;3.26e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.74e-08,5;DOID:450,1.74e-08,5;DOID:66,1.74e-08,5;DOID:423,1.74e-08,5;DOID:0080000,1.74e-08,5;DOID:11722,1.74e-08,5;DOID:0060084,2.80e-07,3;DOID:127,2.80e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0003688!9.66e-08!6;UBERON:0002358!9.66e-08!6;UBERON:0003684!9.66e-08!6;UBERON:0001178!9.66e-08!6;UBERON:0002199!1.07e-07!45;UBERON:0002416!1.07e-07!45;UBERON:0004923!2.81e-07!57;UBERON:0000948!4.38e-07!24;UBERON:0005498!4.38e-07!24;UBERON:0004140!4.38e-07!24;UBERON:0009881!4.38e-07!24;UBERON:0004141!4.38e-07!24;UBERON:0003084!4.38e-07!24;UBERON:0007005!4.38e-07!24;UBERON:0004139!4.38e-07!24;UBERON:0004291!4.38e-07!24;UBERON:0002385!5.69e-07!63;UBERON:0001015!5.69e-07!63;UBERON:0000383!5.69e-07!63;UBERON:0001134!6.22e-07!61;UBERON:0002036!6.22e-07!61;UBERON:0003082!6.22e-07!61 | |ontology_enrichment_uberon=UBERON:0003688!9.66e-08!6;UBERON:0002358!9.66e-08!6;UBERON:0003684!9.66e-08!6;UBERON:0001178!9.66e-08!6;UBERON:0002199!1.07e-07!45;UBERON:0002416!1.07e-07!45;UBERON:0004923!2.81e-07!57;UBERON:0000948!4.38e-07!24;UBERON:0005498!4.38e-07!24;UBERON:0004140!4.38e-07!24;UBERON:0009881!4.38e-07!24;UBERON:0004141!4.38e-07!24;UBERON:0003084!4.38e-07!24;UBERON:0007005!4.38e-07!24;UBERON:0004139!4.38e-07!24;UBERON:0004291!4.38e-07!24;UBERON:0002385!5.69e-07!63;UBERON:0001015!5.69e-07!63;UBERON:0000383!5.69e-07!63;UBERON:0001134!6.22e-07!61;UBERON:0002036!6.22e-07!61;UBERON:0003082!6.22e-07!61 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;1.40e-17;9!UBERON:0000042;1.40e-17;9!UBERON:0003688;1.13e-15;6!UBERON:0002358;1.13e-15;6!UBERON:0003684;1.13e-15;6!UBERON:0001178;1.13e-15;6!UBERON:0004797;2.22e-10;4!UBERON:0000415;2.22e-10;4!UBERON:0007240;2.22e-10;4!UBERON:0005742;2.22e-10;4!UBERON:0005734;2.22e-10;4!UBERON:0004664;2.22e-10;4!UBERON:0004663;2.22e-10;4!UBERON:0002199;1.17e-08;46!UBERON:0002416;1.17e-08;46!UBERON:0007846;2.16e-08;3!UBERON:0000043;2.16e-08;3!UBERON:0007845;2.16e-08;3!UBERON:0002097;1.24e-07;41!UBERON:0001013;3.70e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,1.42e-15,6;UBERON:0002358,1.42e-15,6;UBERON:0003684,1.42e-15,6;UBERON:0001178,1.42e-15,6;UBERON:0004457,1.03e-12,12;UBERON:0000042,1.03e-12,12;UBERON:0002199,2.87e-12,46;UBERON:0002416,2.87e-12,46;UBERON:0000415,1.50e-10,4;UBERON:0007240,1.50e-10,4;UBERON:0005742,1.50e-10,4;UBERON:0005734,1.50e-10,4;UBERON:0004664,1.50e-10,4;UBERON:0004663,1.50e-10,4;UBERON:0002097,1.08e-09,41;UBERON:0004797,1.23e-08,7;UBERON:0007846,1.68e-08,3;UBERON:0000043,1.68e-08,3;UBERON:0007845,1.68e-08,3;UBERON:0004923,2.22e-08,66;UBERON:0002384,1.22e-07,371;UBERON:0001013,3.43e-07,14 | |||
|phase1_expression=5.08699461957559,9.42042305120326,6.20199378022273,3.00219895059391,4.46961094427288,8.72338524100369,0,1.26343974685366,2.87304191019822,0,0,0.218441372130172,1.05506791291381,0.247532705920093,0,0,0,0,0,0,0,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,2.55725123687061,0,4.01070328508712,6.95263291011954,0.795285947051099,0.973269740605272,0.0945348171640679,0.886917589850256,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.47880366186723,3.92554586160197,1.72131935057184,12.9076479336966,4.61068896857864,2.80338800071154,0,0.74000264525148,0.622422070799533,0,0.163461903113459,0,1.15235184896,0,0,0,0.448346041655403,0.117434498643765,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0.30648779579902,0,0.226864366320042,2.33206526395521,4.69826255400848,4.66250182551036,4.50136644126603,0.412210116953756,2.31876486041066,2.60563598864226,1.85653965465393,0.779496041289589,4.29137416214995,3.31379635112278,0.323292113637624,6.74518225781567,1.0075209822764,0.67824236924195,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,3.25057549622385,5.77503585335668,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.352226082707465,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0.22001485746285,0.258543431515556,0,1.690605505112,0,1.04007436911366,0,0,0,0.285955987316295,0,0,0.65147236858747,0.355391948742546,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0,0,0.479249710983165,1.14861935834114,0,3.04040744001916,0.821905290201534,1.25342674267927,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.36807447515742,0,0,0.831883446123229,1.96271887676878,0.315404830067869,0.937131319941706,0.300946099727719,0,0,0.664225598535437,0.184369168541703,0.260650843404249,0.195801157462741,0,0,0,0,0.909382714338778,11.6504807657348,3.62868351995616,5.45837177201309,0.306923946576125,3.64858122762996,9.35415789566617,3.58195074346692,18.8199087738021,2.96836132889982,0.616838775210622,1.9531789784444,0.246381468041427,0,0.116210378459959,0,0,0,0.803701137152247,0.546273504020151,2.62248829918848,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,3.21367859688319,0.096670718292122,0.154048617114644,0.15350367472613,0,0.322260734604821,0,0.511359764496605,1.06838442776085,0,0,0,0,1.85938219718914,4.7221852024596,0,0.924100740528266,0.532306030317022,0,0,0,0.372158369359667,0.949138274156178,0.762520775695299,0.255897791311334,0.42793898803392,0.318203247925937,0,0.179872457583315,0.823611089208164,0.471249609382746,0,0,0,0.48763373908959,0,0,0.818999468447914,1.83827061539827,2.26016233240486,0,1.99031692572366,0,0,0,0,0,0,0.286822704408103,0.491245205065606,0.35667105148125,0.354761064070598,3.79993743535795,3.29294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,1.48482340416319,0.614321404198464,0,0.140669416410513,0.222617410045812,0.16480387422676,0,0.996239941255349,0,0,0,0,3.73247505194169,0,0,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846452843541768,0.113942055847001,0,0,0.108647371922008,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0.141353071433941,0,0,0,0.611030144933625,0,0,0,0.067401132980677,0,0,0,0,0,1.97292201424695,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.0870592065804026,0.34945333648406,0.171986032471617,0,0,0,0,0,0.225980740780532,0.137041924646751,0,0.0633107959558787,0,0,0.426905989478705,0,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0.101998217636322,0,0,0,0,0.429765441419957,0,1.39641200636127,0.229160424011684,0,0,0,0,0.201550417460179,1.80149941771202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,1.42939065274673,0,0,2.17199840701485,1.72844298240254,1.63293680054705,0,0,1.19271615249795,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0.597019211547496,0.701139929541673,0,1.51522404220071,2.76724691927833,0,1.37304041038154,3.4783112465545,0.310874401165561,0.295710299979268,0.318593534327405,0,0,1.65882483136342,2.12673371646396,0.521745061811734,0.300515217994437,2.66563648518157,0.406870733204662,0,0.537052785212442,0.464033759878494,0.398095888698616,0,2.40376993627955,1.34699795506368,0,0,0,0,0.453411851024545,1.15761237161917,0.734210113519403,1.07453304648892,0.926404341482917,4.16639694199544,0.706756583783524,0.38582807654183,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,4.23211132428821,0,0,0,0,0,0,0,0.161475645631851,1.42769420259154,0,0,0,0,0.762764190934334,0,0,0.225630985047772,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0.12776242763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| ||
|short_description=p@chr3:112324034..112324048,- | |short_description=p@chr3:112324034..112324048,- | ||
}} | }} |
Latest revision as of 14:17, 29 July 2015
Short description: | p@chr3:112324034..112324048, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:112324034..112324048, - |
Coexpression cluster: | C333_Fibroblast_Smooth_Preadipocyte_Adipocyte_Ewing_Placental_sacrococcigeal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.11e-17 | 76 |
fat cell | 1.22e-14 | 15 |
fibroblast of tunica adventitia of artery | 1.50e-10 | 4 |
fibroblast of the aortic adventitia | 1.50e-10 | 4 |
skin fibroblast | 1.61e-10 | 23 |
preadipocyte | 1.44e-09 | 12 |
omentum preadipocyte | 8.54e-09 | 3 |
fibrocyte | 1.68e-08 | 3 |
tendon cell | 1.68e-08 | 3 |
adipocyte of omentum tissue | 1.81e-08 | 3 |
multi fate stem cell | 3.19e-08 | 427 |
somatic stem cell | 6.72e-08 | 433 |
stem cell | 1.75e-07 | 441 |
mesenchymal cell | 4.11e-07 | 354 |
connective tissue cell | 9.85e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
omentum | 1.42e-15 | 6 |
peritoneum | 1.42e-15 | 6 |
abdominal cavity | 1.42e-15 | 6 |
visceral peritoneum | 1.42e-15 | 6 |
cavity lining | 1.03e-12 | 12 |
serous membrane | 1.03e-12 | 12 |
integument | 2.87e-12 | 46 |
integumental system | 2.87e-12 | 46 |
artery wall | 1.50e-10 | 4 |
tunica adventitia of artery | 1.50e-10 | 4 |
adventitia | 1.50e-10 | 4 |
tunica adventitia of blood vessel | 1.50e-10 | 4 |
aorta tunica adventitia | 1.50e-10 | 4 |
aorta wall | 1.50e-10 | 4 |
skin of body | 1.08e-09 | 41 |
blood vessel layer | 1.23e-08 | 7 |
dense regular connective tissue | 1.68e-08 | 3 |
tendon | 1.68e-08 | 3 |
regular connective tissue | 1.68e-08 | 3 |
organ component layer | 2.22e-08 | 66 |
connective tissue | 1.22e-07 | 371 |
adipose tissue | 3.43e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.74e-08 | 5 |
myotonic disease | 1.74e-08 | 5 |
muscle tissue disease | 1.74e-08 | 5 |
myopathy | 1.74e-08 | 5 |
muscular disease | 1.74e-08 | 5 |
myotonic dystrophy | 1.74e-08 | 5 |
cell type benign neoplasm | 2.80e-07 | 3 |
leiomyoma | 2.80e-07 | 3 |