FFCP PHASE1:Hg19::chr3:30560368..30560379,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:30560368..30560379,+ | |||
|coexpression_cluster_id=C357 | |||
|description=CAGE_peak_at_chr3:30560368..30560379,+ | |description=CAGE_peak_at_chr3:30560368..30560379,+ | ||
|id=chr3:30560368..30560379,+ | |id=chr3:30560368..30560379,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.05e-50!24;CL:0000115!3.75e-42!35;CL:0002078!1.46e-32!44;CL:0000071!6.53e-28!18;CL:0002546!6.53e-28!18;CL:0005020!1.36e-27!6;CL:0002138!1.36e-27!6;CL:0005022!1.36e-27!6;CL:0000213!4.61e-24!57;CL:0000215!4.61e-24!57;CL:0002618!3.61e-14!3;CL:1000413!3.47e-12!9;CL:0002543!5.29e-12!6;CL:0000222!3.55e-09!119;CL:0002144!2.85e-07!3 | |ontology_enrichment_celltype=CL:0002139!1.05e-50!24;CL:0000115!3.75e-42!35;CL:0002078!1.46e-32!44;CL:0000071!6.53e-28!18;CL:0002546!6.53e-28!18;CL:0005020!1.36e-27!6;CL:0002138!1.36e-27!6;CL:0005022!1.36e-27!6;CL:0000213!4.61e-24!57;CL:0000215!4.61e-24!57;CL:0002618!3.61e-14!3;CL:1000413!3.47e-12!9;CL:0002543!5.29e-12!6;CL:0000222!3.55e-09!119;CL:0002144!2.85e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002138;5.62e-102;6!CL:0002139;2.79e-50;24!CL:0000115;1.59e-36;36!CL:0002144;3.33e-34;3!CL:0002078;2.77e-29;45!CL:0000213;5.09e-16;58!CL:0000215;5.09e-16;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,5.07e-102,6;CL:0002138,5.07e-102,6;CL:0005022,5.07e-102,6;CL:0002139,2.89e-50,24;CL:0000115,9.61e-44,36;CL:0002078,4.77e-35,45;CL:0002144,3.94e-34,3;CL:0000213,3.07e-27,58;CL:0000215,3.07e-27,58;CL:0000222,4.25e-13,121 | |||
|ontology_enrichment_development_v019=CL:0005022;5.62e-102;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!6.53e-28!18;UBERON:0004638!6.53e-28!18;UBERON:0004852!6.53e-28!18;UBERON:0000487!2.06e-22!22;UBERON:0000055!3.50e-21!69;UBERON:0001473!1.56e-20!8;UBERON:0004536!1.56e-20!8;UBERON:0006558!1.56e-20!8;UBERON:0006914!1.92e-19!25;UBERON:0002049!6.94e-18!79;UBERON:0007798!6.94e-18!79;UBERON:0002465!2.72e-16!10;UBERON:0001009!3.14e-15!113;UBERON:0004535!2.91e-14!110;UBERON:0003915!3.47e-12!9;UBERON:0004700!3.47e-12!9;UBERON:0001917!3.47e-12!9;UBERON:0001638!5.67e-12!9;UBERON:0003920!5.67e-12!9;UBERON:0004582!5.67e-12!9;UBERON:0001981!2.70e-11!60;UBERON:0007500!2.70e-11!60;UBERON:0004537!2.70e-11!60;UBERON:0006965!2.70e-11!60;UBERON:0003914!4.68e-10!118;UBERON:0004872!1.20e-09!84;UBERON:0002066!1.12e-08!5;UBERON:0004111!1.28e-08!241;UBERON:0001915!2.85e-07!3;UBERON:0001982!2.85e-07!3;UBERON:0000477!6.38e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;1.17e-76;8!UBERON:0004536;1.17e-76;8!UBERON:0006558;1.17e-76;8!UBERON:0002465;1.86e-61;10!UBERON:0010523;3.33e-34;3!UBERON:0001915;3.33e-34;3!UBERON:0001982;3.33e-34;3!UBERON:0002405;4.47e-23;27!UBERON:0002193;3.92e-14;42!UBERON:0000055;4.12e-12;65!UBERON:0002049;9.01e-11;75!UBERON:0007798;9.01e-11;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,1.08e-76,8;UBERON:0004536,1.08e-76,8;UBERON:0006558,1.08e-76,8;UBERON:0002465,1.75e-61,10;UBERON:0010523,3.94e-34,3;UBERON:0001915,3.94e-34,3;UBERON:0001982,3.94e-34,3;UBERON:0000055,7.05e-18,68;UBERON:0002049,1.34e-15,78;UBERON:0007798,1.34e-15,78;UBERON:0004535,3.60e-11,109;UBERON:0001009,7.18e-11,112;UBERON:0002405,8.45e-07,93 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,0,0.419499436209906,0.275118041940067,0.417989933073621,1.03366703667732,1.06729878806013,0.66944122552934,2.01414658554573,0,3.41686880567437,0,0,0.803697554556718,0.673588117878509,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59859605969933,2.77791307545966,1.90254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441280633457501,0.451961481561065,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76280561296425,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0.596287222100115,0.860234595106124,0,0,0.419499436209906,0.275118041940067,0.417989933073621,1.03366703667732,1.06729878806013,0.66944122552934,2.01414658554573,0,3.41686880567437,0,0,0.803697554556718,0.673588117878509,0.337834441449967,0,0,0.183201743930407,0,0,0,0,0.25326102332916,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59859605969933,2.77791307545966,1.90254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,1.54227252690289,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.394573622547734,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441280633457501,0.451961481561065,0,0,0,0,0,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76280561296425,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0.205325613712494,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0,0,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr3:30560368..30560379,+ | |short_description=p@chr3:30560368..30560379,+ | ||
}} | }} |
Latest revision as of 20:21, 29 July 2015
Short description: | p@chr3:30560368..30560379, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:30560368..30560379, + |
Coexpression cluster: | C357_Endothelial_Lymphatic_Renal_Hepatic_seminal_breast_heart |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 5.07e-102 | 6 |
endothelial cell of lymphatic vessel | 5.07e-102 | 6 |
vascular lymphangioblast | 5.07e-102 | 6 |
endothelial cell of vascular tree | 2.89e-50 | 24 |
endothelial cell | 9.61e-44 | 36 |
meso-epithelial cell | 4.77e-35 | 45 |
capillary endothelial cell | 3.94e-34 | 3 |
lining cell | 3.07e-27 | 58 |
barrier cell | 3.07e-27 | 58 |
mesodermal cell | 4.25e-13 | 121 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.08e-76 | 8 |
lymph vasculature | 1.08e-76 | 8 |
lymphatic part of lymphoid system | 1.08e-76 | 8 |
lymphoid system | 1.75e-61 | 10 |
microcirculatory vessel | 3.94e-34 | 3 |
endothelium of capillary | 3.94e-34 | 3 |
capillary | 3.94e-34 | 3 |
vessel | 7.05e-18 | 68 |
vasculature | 1.34e-15 | 78 |
vascular system | 1.34e-15 | 78 |
cardiovascular system | 3.60e-11 | 109 |
circulatory system | 7.18e-11 | 112 |
immune system | 8.45e-07 | 93 |