FFCP PHASE1:Hg19::chr4:90857427..90857438,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:90857427..90857438,+ | |||
|coexpression_cluster_id=C328 | |coexpression_cluster_id=C328 | ||
|description=CAGE_peak_at_chr4:90857427..90857438,+ | |description=CAGE_peak_at_chr4:90857427..90857438,+ | ||
|id=chr4:90857427..90857438,+ | |id=chr4:90857427..90857438,+ | ||
|ontology_enrichment_celltype=CL:0002139!2.29e-68!24;CL:0000115!1.18e-49!35;CL:0000071!3.49e-46!18;CL:0002546!3.49e-46!18;CL:0002078!2.65e-38!44;CL:0000213!3.01e-28!57;CL:0000215!3.01e-28!57;CL:1000413!5.72e-27!9;CL:0005020!4.69e-24!6;CL:0002138!4.69e-24!6;CL:0005022!4.69e-24!6;CL:0002544!2.38e-16!6;CL:0002144!7.46e-13!3;CL:0002618!1.24e-12!3;CL:0000076!8.24e-11!62;CL:0002543!9.11e-11!6;CL:0000222!1.20e-10!119;CL:0002545!7.12e-09!2 | |ontology_enrichment_celltype=CL:0002139!2.29e-68!24;CL:0000115!1.18e-49!35;CL:0000071!3.49e-46!18;CL:0002546!3.49e-46!18;CL:0002078!2.65e-38!44;CL:0000213!3.01e-28!57;CL:0000215!3.01e-28!57;CL:1000413!5.72e-27!9;CL:0005020!4.69e-24!6;CL:0002138!4.69e-24!6;CL:0005022!4.69e-24!6;CL:0002544!2.38e-16!6;CL:0002144!7.46e-13!3;CL:0002618!1.24e-12!3;CL:0000076!8.24e-11!62;CL:0002543!9.11e-11!6;CL:0000222!1.20e-10!119;CL:0002545!7.12e-09!2 | ||
|ontology_enrichment_celltype_v019=CL:0002138;1.70e-63;6!CL:0002139;2.17e-62;24!CL:0000115;8.84e-32;36!CL:0002078;2.56e-25;45!CL:0002144;2.66e-21;3!CL:0000071;3.37e-21;18!CL:0000213;9.10e-16;58!CL:0000215;9.10e-16;58!CL:1000413;9.84e-08;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,2.87e-63,6;CL:0002138,2.87e-63,6;CL:0005022,2.87e-63,6;CL:0002139,1.86e-62,24;CL:0000115,1.98e-41,36;CL:0002078,5.28e-33,45;CL:0000213,1.94e-25,58;CL:0000215,1.94e-25,58;CL:0002144,9.47e-22,3;CL:0000071,2.56e-21,18;CL:0002546,2.56e-21,18;CL:0000222,9.81e-12,121;CL:1000413,1.17e-07,9 | |||
|ontology_enrichment_development_v019=CL:0005022;1.70e-63;6!CL:0002546;3.37e-21;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001473;1.05e-47;8!UBERON:0004536;1.05e-47;8!UBERON:0006558;1.05e-47;8!UBERON:0002465;3.21e-38;10!UBERON:0010523;2.66e-21;3!UBERON:0001915;2.66e-21;3!UBERON:0001982;2.66e-21;3!UBERON:0004638;3.37e-21;18!UBERON:0001986;3.37e-21;18!UBERON:0004852;3.37e-21;18!UBERON:0000055;1.36e-17;65!UBERON:0000487;2.29e-17;22!UBERON:0005795;1.31e-16;1!UBERON:0006914;2.71e-15;25!UBERON:0002405;3.04e-14;27!UBERON:0000490;4.97e-11;33!UBERON:0002193;5.53e-10;42!UBERON:0002049;2.18e-09;75!UBERON:0007798;2.18e-09;75!UBERON:0003915;9.84e-08;9!UBERON:0004700;9.84e-08;9!UBERON:0001917;9.84e-08;9!UBERON:0004535;1.25e-07;109 | |||
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| ||
|short_description=p@chr4:90857427..90857438,+ | |short_description=p@chr4:90857427..90857438,+ | ||
}} | }} |
Latest revision as of 08:03, 30 July 2015
Short description: | p@chr4:90857427..90857438, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:90857427..90857438, + |
Coexpression cluster: | C328_Endothelial_Lymphatic_Renal_Hepatic_chronic_extraskeletal_adipose |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 2.87e-63 | 6 |
endothelial cell of lymphatic vessel | 2.87e-63 | 6 |
vascular lymphangioblast | 2.87e-63 | 6 |
endothelial cell of vascular tree | 1.86e-62 | 24 |
endothelial cell | 1.98e-41 | 36 |
meso-epithelial cell | 5.28e-33 | 45 |
lining cell | 1.94e-25 | 58 |
barrier cell | 1.94e-25 | 58 |
capillary endothelial cell | 9.47e-22 | 3 |
blood vessel endothelial cell | 2.56e-21 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.56e-21 | 18 |
mesodermal cell | 9.81e-12 | 121 |
endothelial cell of artery | 1.17e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 1.55e-47 | 8 |
lymph vasculature | 1.55e-47 | 8 |
lymphatic part of lymphoid system | 1.55e-47 | 8 |
lymphoid system | 4.38e-38 | 10 |
microcirculatory vessel | 9.47e-22 | 3 |
endothelium of capillary | 9.47e-22 | 3 |
capillary | 9.47e-22 | 3 |
vessel | 1.40e-21 | 68 |
blood vessel endothelium | 2.56e-21 | 18 |
endothelium | 2.56e-21 | 18 |
cardiovascular system endothelium | 2.56e-21 | 18 |
vasculature | 1.05e-18 | 78 |
vascular system | 1.05e-18 | 78 |
simple squamous epithelium | 1.84e-17 | 22 |
cardiovascular system | 5.61e-16 | 109 |
circulatory system | 1.60e-15 | 112 |
squamous epithelium | 2.23e-15 | 25 |
endothelial tube | 1.17e-07 | 9 |
arterial system endothelium | 1.17e-07 | 9 |
endothelium of artery | 1.17e-07 | 9 |