FFCP PHASE1:Hg19::chr5:133482338..133482353,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:133482338..133482353,+ | |||
|coexpression_cluster_id=C1525 | |coexpression_cluster_id=C1525 | ||
|description=CAGE_peak_at_chr5:133482338..133482353,+ | |description=CAGE_peak_at_chr5:133482338..133482353,+ | ||
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|ontology_enrichment_celltype=CL:0000838!7.08e-20!52;CL:0000542!2.27e-19!53;CL:0000051!2.27e-19!53;CL:0000084!3.89e-16!25;CL:0000827!3.89e-16!25;CL:0000791!1.15e-11!18;CL:0000789!1.15e-11!18;CL:0002420!1.15e-11!18;CL:0002419!1.15e-11!18;CL:0000790!1.15e-11!18;CL:0002087!1.16e-08!119;CL:0000842!5.71e-08!3;CL:0000623!7.38e-08!3;CL:0000825!7.38e-08!3;CL:0000738!1.03e-07!140;CL:0002582!2.58e-07!3;CL:0000625!2.97e-07!11;CL:0000624!4.89e-07!6 | |ontology_enrichment_celltype=CL:0000838!7.08e-20!52;CL:0000542!2.27e-19!53;CL:0000051!2.27e-19!53;CL:0000084!3.89e-16!25;CL:0000827!3.89e-16!25;CL:0000791!1.15e-11!18;CL:0000789!1.15e-11!18;CL:0002420!1.15e-11!18;CL:0002419!1.15e-11!18;CL:0000790!1.15e-11!18;CL:0002087!1.16e-08!119;CL:0000842!5.71e-08!3;CL:0000623!7.38e-08!3;CL:0000825!7.38e-08!3;CL:0000738!1.03e-07!140;CL:0002582!2.58e-07!3;CL:0000625!2.97e-07!11;CL:0000624!4.89e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000624;4.60e-11;6!CL:0000084;4.63e-10;25!CL:0000791;3.52e-08;18!CL:0000789;3.52e-08;18!CL:0002419;3.52e-08;18 | |ontology_enrichment_celltype_v019=CL:0000624;4.60e-11;6!CL:0000084;4.63e-10;25!CL:0000791;3.52e-08;18!CL:0000789;3.52e-08;18!CL:0002419;3.52e-08;18 | ||
|ontology_enrichment_celltype_v019_2=CL:0000624,3.75e-11,6;CL:0000084,4.42e-10,25;CL:0000827,4.42e-10,25;CL:0000791,3.23e-08,18;CL:0000789,3.23e-08,18;CL:0002420,3.23e-08,18;CL:0002419,3.23e-08,18;CL:0000790,3.23e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;3.52e-08;18 | |ontology_enrichment_development_v019=CL:0000790;3.52e-08;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.09e-12!15;UBERON:0000179!3.09e-12!15;UBERON:0000463!3.09e-12!15 | |ontology_enrichment_uberon=UBERON:0000178!3.09e-12!15;UBERON:0000179!3.09e-12!15;UBERON:0000463!3.09e-12!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.04e-31;2!UBERON:0005058;4.04e-31;2!UBERON:0009113;4.04e-31;2!UBERON:0000178;8.23e-17;15!UBERON:0000179;8.23e-17;15!UBERON:0000463;8.23e-17;15!UBERON:0002390;1.92e-14;32!UBERON:0004177;4.38e-13;5!UBERON:0005057;4.38e-13;5!UBERON:0002193;4.24e-10;42 | |ontology_enrichment_uberon_v019=UBERON:0002370;4.04e-31;2!UBERON:0005058;4.04e-31;2!UBERON:0009113;4.04e-31;2!UBERON:0000178;8.23e-17;15!UBERON:0000179;8.23e-17;15!UBERON:0000463;8.23e-17;15!UBERON:0002390;1.92e-14;32!UBERON:0004177;4.38e-13;5!UBERON:0005057;4.38e-13;5!UBERON:0002193;4.24e-10;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.75e-17,15;UBERON:0000179,8.75e-17,15;UBERON:0000463,8.75e-17,15;UBERON:0002370,4.18e-16,4;UBERON:0005058,4.18e-16,4;UBERON:0009113,4.18e-16,4;UBERON:0003295,4.18e-16,4;UBERON:0005562,4.18e-16,4;UBERON:0003351,4.60e-11,6;UBERON:0004177,1.29e-09,7;UBERON:0005057,1.29e-09,7;UBERON:0000974,5.43e-07,10;UBERON:0003408,5.43e-07,10;UBERON:0001042,5.43e-07,10;UBERON:0009145,5.43e-07,10 | |||
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| ||
|short_description=p@chr5:133482338..133482353,+ | |short_description=p@chr5:133482338..133482353,+ | ||
}} | }} |
Latest revision as of 09:46, 30 July 2015
Short description: | p@chr5:133482338..133482353, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133482338..133482353, + |
Coexpression cluster: | C1525_Hodgkin_chronic_CD4_thymus_Whole_blood_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 3.75e-11 | 6 |
T cell | 4.42e-10 | 25 |
pro-T cell | 4.42e-10 | 25 |
mature alpha-beta T cell | 3.23e-08 | 18 |
alpha-beta T cell | 3.23e-08 | 18 |
immature T cell | 3.23e-08 | 18 |
mature T cell | 3.23e-08 | 18 |
immature alpha-beta T cell | 3.23e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
blood | 8.75e-17 | 15 |
haemolymphatic fluid | 8.75e-17 | 15 |
organism substance | 8.75e-17 | 15 |
thymus | 4.18e-16 | 4 |
hemolymphoid system gland | 4.18e-16 | 4 |
thymic region | 4.18e-16 | 4 |
pharyngeal gland | 4.18e-16 | 4 |
thymus primordium | 4.18e-16 | 4 |
pharyngeal epithelium | 4.60e-11 | 6 |
hemopoietic organ | 1.29e-09 | 7 |
immune organ | 1.29e-09 | 7 |
neck | 5.43e-07 | 10 |
gland of gut | 5.43e-07 | 10 |
chordate pharynx | 5.43e-07 | 10 |
pharyngeal region of foregut | 5.43e-07 | 10 |