FFCP PHASE1:Hg19::chr5:133482429..133482440,+: Difference between revisions
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|id=chr5:133482429..133482440,+
|short_description=p@chr5:133482429..133482440,+
|description=CAGE_peak_at_chr5:133482429..133482440,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:133482429..133482440,+ | |||
|coexpression_cluster_id=C1525 | |||
|description=CAGE_peak_at_chr5:133482429..133482440,+ | |||
|id=chr5:133482429..133482440,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.16e-14!25;CL:0000827!1.16e-14!25;CL:0000791!1.21e-12!18;CL:0000789!1.21e-12!18;CL:0002420!1.21e-12!18;CL:0002419!1.21e-12!18;CL:0000790!1.21e-12!18;CL:0000542!1.48e-11!53;CL:0000051!1.48e-11!53;CL:0000838!8.64e-11!52;CL:0000624!7.07e-10!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.85e-16;25!CL:0000135;2.38e-12;3!CL:0000226;2.38e-12;3!CL:0000842;2.38e-12;3!CL:0000388;2.38e-12;3!CL:0000791;5.22e-12;18!CL:0000789;5.22e-12;18!CL:0002419;5.22e-12;18!CL:0000625;1.53e-07;11!CL:0000624;6.18e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.16e-16,25;CL:0000827,2.16e-16,25;CL:0000135,2.12e-12,3;CL:0000388,2.12e-12,3;CL:0000226,2.25e-12,3;CL:0000842,2.25e-12,3;CL:0000791,5.81e-12,18;CL:0000789,5.81e-12,18;CL:0002420,5.81e-12,18;CL:0002419,5.81e-12,18;CL:0000790,5.81e-12,18;CL:0000838,1.71e-07,52;CL:0000625,1.72e-07,11;CL:0000542,2.45e-07,53;CL:0000051,2.45e-07,53;CL:0000624,6.09e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000790;5.22e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.32e-18;2!UBERON:0005058;2.32e-18;2!UBERON:0009113;2.32e-18;2!UBERON:0000178;2.91e-14;15!UBERON:0000179;2.91e-14;15!UBERON:0000463;2.91e-14;15!UBERON:0007846;2.38e-12;3!UBERON:0000043;2.38e-12;3!UBERON:0007845;2.38e-12;3!UBERON:0002390;1.23e-11;32!UBERON:0004177;6.88e-08;5!UBERON:0005057;6.88e-08;5!UBERON:0002193;1.81e-07;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.57e-14,15;UBERON:0000179,2.57e-14,15;UBERON:0000463,2.57e-14,15;UBERON:0007846,2.12e-12,3;UBERON:0000043,2.12e-12,3;UBERON:0007845,2.12e-12,3;UBERON:0002370,1.28e-09,4;UBERON:0005058,1.28e-09,4;UBERON:0009113,1.28e-09,4;UBERON:0003295,1.28e-09,4;UBERON:0005562,1.28e-09,4 | |||
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| ||
|short_description=p@chr5:133482429..133482440,+ | |||
}} | }} |
Latest revision as of 09:46, 30 July 2015
Short description: | p@chr5:133482429..133482440, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133482429..133482440, + |
Coexpression cluster: | C1525_Hodgkin_chronic_CD4_thymus_Whole_blood_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.16e-16 | 25 |
pro-T cell | 2.16e-16 | 25 |
fibrocyte | 2.12e-12 | 3 |
tendon cell | 2.12e-12 | 3 |
single nucleate cell | 2.25e-12 | 3 |
mononuclear cell | 2.25e-12 | 3 |
mature alpha-beta T cell | 5.81e-12 | 18 |
alpha-beta T cell | 5.81e-12 | 18 |
immature T cell | 5.81e-12 | 18 |
mature T cell | 5.81e-12 | 18 |
immature alpha-beta T cell | 5.81e-12 | 18 |
lymphoid lineage restricted progenitor cell | 1.71e-07 | 52 |
CD8-positive, alpha-beta T cell | 1.72e-07 | 11 |
lymphocyte | 2.45e-07 | 53 |
common lymphoid progenitor | 2.45e-07 | 53 |
CD4-positive, alpha-beta T cell | 6.09e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
blood | 2.57e-14 | 15 |
haemolymphatic fluid | 2.57e-14 | 15 |
organism substance | 2.57e-14 | 15 |
dense regular connective tissue | 2.12e-12 | 3 |
tendon | 2.12e-12 | 3 |
regular connective tissue | 2.12e-12 | 3 |
thymus | 1.28e-09 | 4 |
hemolymphoid system gland | 1.28e-09 | 4 |
thymic region | 1.28e-09 | 4 |
pharyngeal gland | 1.28e-09 | 4 |
thymus primordium | 1.28e-09 | 4 |