FFCP PHASE1:Hg19::chr5:52627415..52627422,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:52627415..52627422,- | |||
|description=CAGE_peak_at_chr5:52627415..52627422,- | |description=CAGE_peak_at_chr5:52627415..52627422,- | ||
|id=chr5:52627415..52627422,- | |id=chr5:52627415..52627422,- | ||
|ontology_enrichment_celltype=CL:0002368!1.09e-29!13;CL:0002076!3.10e-29!43;CL:0002202!9.71e-25!9;CL:0002632!9.71e-25!9;CL:0000223!1.82e-20!59;CL:0000068!4.48e-20!3;CL:0000069!4.48e-20!3;CL:0000307!4.48e-20!3;CL:0000377!4.48e-20!3;CL:0002621!2.75e-19!3;CL:0002328!4.52e-19!3;CL:0002159!1.06e-16!13;CL:0000066!1.17e-13!254;CL:0000575!2.20e-13!2;CL:0002251!5.22e-10!21;CL:0002166!3.11e-09!3;CL:0002077!2.81e-08!33;CL:0000220!1.64e-07!246;CL:0002336!1.72e-07!1;CL:0002261!1.72e-07!1;CL:0002170!1.72e-07!1;CL:0002321!2.05e-07!248;CL:0000244!3.11e-07!4;CL:0000731!3.11e-07!4;CL:0002574!4.61e-07!1;CL:0002327!4.77e-07!4 | |ontology_enrichment_celltype=CL:0002368!1.09e-29!13;CL:0002076!3.10e-29!43;CL:0002202!9.71e-25!9;CL:0002632!9.71e-25!9;CL:0000223!1.82e-20!59;CL:0000068!4.48e-20!3;CL:0000069!4.48e-20!3;CL:0000307!4.48e-20!3;CL:0000377!4.48e-20!3;CL:0002621!2.75e-19!3;CL:0002328!4.52e-19!3;CL:0002159!1.06e-16!13;CL:0000066!1.17e-13!254;CL:0000575!2.20e-13!2;CL:0002251!5.22e-10!21;CL:0002166!3.11e-09!3;CL:0002077!2.81e-08!33;CL:0000220!1.64e-07!246;CL:0002336!1.72e-07!1;CL:0002261!1.72e-07!1;CL:0002170!1.72e-07!1;CL:0002321!2.05e-07!248;CL:0000244!3.11e-07!4;CL:0000731!3.11e-07!4;CL:0002574!4.61e-07!1;CL:0002327!4.77e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0000307;8.85e-75;3!CL:0002368;6.20e-31;13!CL:0002202;1.44e-25;9!CL:0002632;1.44e-25;9!CL:0002159;1.52e-16;14!CL:0000317;1.14e-13;2!CL:1000448;1.14e-13;2!CL:0002308;1.14e-13;2!CL:0000575;1.14e-13;2!CL:0002140;1.14e-13;2!CL:0002166;1.47e-09;3!CL:0000244;1.75e-07;4!CL:0000731;1.75e-07;4!CL:0002077;6.48e-07;34!CL:0002076;9.95e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000068,1.66e-74,3;CL:0000069,1.66e-74,3;CL:0000307,1.66e-74,3;CL:0000377,1.66e-74,3;CL:0002368,7.24e-31,13;CL:0002202,1.77e-25,9;CL:0002632,1.77e-25,9;CL:0002159,1.56e-16,14;CL:0000317,1.21e-13,2;CL:1000448,1.21e-13,2;CL:0002308,1.21e-13,2;CL:0002140,1.21e-13,2;CL:0000575,1.37e-13,2;CL:0002076,6.58e-10,42;CL:0002166,1.30e-09,3;CL:0000244,1.49e-07,4;CL:0000731,1.49e-07,4;CL:0000223,2.81e-07,58;CL:0002077,3.36e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000377;8.85e-75;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001949!2.75e-19!3;UBERON:0004815!4.52e-19!3;UBERON:0002031!4.52e-19!3;UBERON:0007196!1.02e-15!14;UBERON:0001558!1.02e-15!14;UBERON:0002185!1.91e-14!4;UBERON:0001004!4.24e-10!72;UBERON:0003126!6.99e-09!7;UBERON:0001005!6.99e-09!7;UBERON:0005178!3.57e-08!34;UBERON:0002224!3.57e-08!34;UBERON:0000065!4.83e-08!53;UBERON:0004119!5.30e-08!169;UBERON:0000925!5.30e-08!169;UBERON:0006595!5.30e-08!169;UBERON:0005181!6.49e-08!35;UBERON:0001828!1.54e-07!8;UBERON:0004807!2.04e-07!28;UBERON:0001708!3.97e-07!4;UBERON:0001704!3.97e-07!4;UBERON:0000964!4.10e-07!4;UBERON:0004348!4.10e-07!4;UBERON:0005427!4.10e-07!4;UBERON:0000997!4.34e-07!1;UBERON:0005056!4.34e-07!1;UBERON:0001911!4.77e-07!4;UBERON:0005333!4.77e-07!4;UBERON:0008425!4.77e-07!4;UBERON:0005311!4.77e-07!4;UBERON:0003102!6.03e-07!95 | |ontology_enrichment_uberon=UBERON:0001949!2.75e-19!3;UBERON:0004815!4.52e-19!3;UBERON:0002031!4.52e-19!3;UBERON:0007196!1.02e-15!14;UBERON:0001558!1.02e-15!14;UBERON:0002185!1.91e-14!4;UBERON:0001004!4.24e-10!72;UBERON:0003126!6.99e-09!7;UBERON:0001005!6.99e-09!7;UBERON:0005178!3.57e-08!34;UBERON:0002224!3.57e-08!34;UBERON:0000065!4.83e-08!53;UBERON:0004119!5.30e-08!169;UBERON:0000925!5.30e-08!169;UBERON:0006595!5.30e-08!169;UBERON:0005181!6.49e-08!35;UBERON:0001828!1.54e-07!8;UBERON:0004807!2.04e-07!28;UBERON:0001708!3.97e-07!4;UBERON:0001704!3.97e-07!4;UBERON:0000964!4.10e-07!4;UBERON:0004348!4.10e-07!4;UBERON:0005427!4.10e-07!4;UBERON:0000997!4.34e-07!1;UBERON:0005056!4.34e-07!1;UBERON:0001911!4.77e-07!4;UBERON:0005333!4.77e-07!4;UBERON:0008425!4.77e-07!4;UBERON:0005311!4.77e-07!4;UBERON:0003102!6.03e-07!95 | ||
|ontology_enrichment_uberon_v019=UBERON:0003126;1.28e-32;7!UBERON:0001005;1.28e-32;7!UBERON:0007196;1.15e-15;15!UBERON:0001558;1.15e-15;15!UBERON:0002419;1.14e-13;2!UBERON:0007771;1.14e-13;2!UBERON:0003297;1.14e-13;2!UBERON:0001821;1.14e-13;2!UBERON:0003487;1.14e-13;2!UBERON:0001820;1.14e-13;2!UBERON:0000065;6.49e-08;44!UBERON:0001708;1.75e-07;4!UBERON:0000964;1.75e-07;4!UBERON:0010409;1.75e-07;4!UBERON:0008895;1.75e-07;4!UBERON:0005178;2.21e-07;34!UBERON:0002224;2.21e-07;34!UBERON:0000072;5.54e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003126,1.67e-32,7;UBERON:0001005,1.67e-32,7;UBERON:0007196,1.31e-15,15;UBERON:0001558,1.31e-15,15;UBERON:0002419,1.21e-13,2;UBERON:0007771,1.21e-13,2;UBERON:0003297,1.21e-13,2;UBERON:0001821,1.21e-13,2;UBERON:0003487,1.21e-13,2;UBERON:0001820,1.21e-13,2;UBERON:0005089,1.21e-13,2;UBERON:0005088,1.21e-13,2;UBERON:0000065,8.61e-08,54;UBERON:0001708,1.59e-07,4;UBERON:0008895,1.59e-07,4;UBERON:0000964,1.92e-07,4;UBERON:0010409,1.92e-07,4;UBERON:0004348,1.92e-07,4;UBERON:0005427,1.92e-07,4;UBERON:0005178,2.95e-07,34;UBERON:0002224,2.95e-07,34;UBERON:0005181,4.58e-07,35 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.926864265692532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,1.70130116690864,0,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0.330569830721956,0,1.40373983744043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59799704358883,2.01090682660736,1.08890984861323,0,1.72202149068492,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.261177619741208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.09288586487763,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0.926864265692532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.57978255948989,0.818238361772504,0.573609190778008,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439001141634502,0,0,0.555530670951178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335964256397719,1.70130116690864,0,0.581267877027924,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0.40101294060657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,0.330569830721956,0,1.40373983744043,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59799704358883,2.01090682660736,1.08890984861323,0,1.72202149068492,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0.261177619741208,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.346576998451015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr5:52627415..52627422,- | |short_description=p@chr5:52627415..52627422,- | ||
}} | }} |
Latest revision as of 15:10, 30 July 2015
Short description: | p@chr5:52627415..52627422, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:52627415..52627422, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
duct epithelial cell | 1.66e-74 | 3 |
branched duct epithelial cell | 1.66e-74 | 3 |
tracheal epithelial cell | 1.66e-74 | 3 |
tracheoblast | 1.66e-74 | 3 |
respiratory epithelial cell | 7.24e-31 | 13 |
epithelial cell of tracheobronchial tree | 1.77e-25 | 9 |
epithelial cell of lower respiratory tract | 1.77e-25 | 9 |
general ecto-epithelial cell | 1.56e-16 | 14 |
sebum secreting cell | 1.21e-13 | 2 |
epithelial cell of sweat gland | 1.21e-13 | 2 |
epithelial cell of skin gland | 1.21e-13 | 2 |
acinar cell of sebaceous gland | 1.21e-13 | 2 |
corneal epithelial cell | 1.37e-13 | 2 |
endo-epithelial cell | 6.58e-10 | 42 |
epithelial cell of Malassez | 1.30e-09 | 3 |
transitional epithelial cell | 1.49e-07 | 4 |
urothelial cell | 1.49e-07 | 4 |
endodermal cell | 2.81e-07 | 58 |
ecto-epithelial cell | 3.36e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
trachea | 1.67e-32 | 7 |
respiratory airway | 1.67e-32 | 7 |
tracheobronchial tree | 1.31e-15 | 15 |
lower respiratory tract | 1.31e-15 | 15 |
skin gland | 1.21e-13 | 2 |
epidermis gland | 1.21e-13 | 2 |
gland of integumental system | 1.21e-13 | 2 |
sebaceous gland | 1.21e-13 | 2 |
skin sebaceous gland | 1.21e-13 | 2 |
sweat gland | 1.21e-13 | 2 |
sweat gland placode | 1.21e-13 | 2 |
sebaceous gland placode | 1.21e-13 | 2 |
respiratory tract | 8.61e-08 | 54 |
jaw skeleton | 1.59e-07 | 4 |
splanchnocranium | 1.59e-07 | 4 |
cornea | 1.92e-07 | 4 |
eye surface | 1.92e-07 | 4 |
optic eminence | 1.92e-07 | 4 |
corneal primordium | 1.92e-07 | 4 |
thoracic cavity element | 2.95e-07 | 34 |
thoracic cavity | 2.95e-07 | 34 |
thoracic segment organ | 4.58e-07 | 35 |