FFCP PHASE1:Hg19::chr6:109696817..109696821,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:109696817..109696821,- to FFCP PHASE1:Hg19::chr6:109696817..109696821,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:109696817..109696821,- | |||
|description=CAGE_peak_at_chr6:109696817..109696821,- | |||
|id=chr6:109696817..109696821,- | |||
|ontology_enrichment_celltype=CL:0000738!5.00e-12!140;CL:0000037!3.55e-11!172;CL:0000566!3.55e-11!172;CL:0000988!7.29e-11!182;CL:0002087!1.97e-10!119;CL:0002031!1.06e-09!124;CL:0002032!2.62e-09!165;CL:0000837!2.62e-09!165 | |||
|ontology_enrichment_celltype_v019=CL:0000623;8.88e-09;3!CL:0002127;5.28e-07;1!CL:0000911;5.28e-07;1!CL:0000814;5.28e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,5.92e-09,3;CL:0000825,5.92e-09,3;CL:0000838,1.04e-07,52;CL:0000738,1.21e-07,136;CL:0000542,1.55e-07,53;CL:0000051,1.55e-07,53;CL:0002127,3.82e-07,1;CL:0000914,3.82e-07,1;CL:0000911,3.82e-07,1;CL:0000814,3.82e-07,1;CL:0002042,3.82e-07,1;CL:0002039,3.82e-07,1;CL:0002040,3.82e-07,1;CL:0002041,3.82e-07,1;CL:0002087,4.74e-07,115 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;5.28e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,7.73e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!5.15e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0002134;2.09e-07;1!UBERON:0005208;2.09e-07;1!UBERON:0004145;2.09e-07;1!UBERON:0005946;2.09e-07;1!UBERON:0005965;2.09e-07;1!UBERON:0002078;2.09e-07;1!UBERON:0002038;5.28e-07;1!UBERON:0000996;5.28e-07;1!UBERON:0009661;5.28e-07;1!UBERON:0002950;5.28e-07;1!UBERON:0001891;5.28e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002134,2.37e-07,1;UBERON:0005208,2.37e-07,1;UBERON:0005946,2.37e-07,1;UBERON:0005965,2.37e-07,1;UBERON:0002078,2.37e-07,1;UBERON:0002038,2.52e-07,1;UBERON:0009661,2.52e-07,1;UBERON:0002950,2.52e-07,1;UBERON:0001891,2.52e-07,1;UBERON:0009616,2.52e-07,1;UBERON:0010286,2.52e-07,1;UBERON:0000996,4.85e-07,1 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0.229240217243854,0.164201178899891,0.236132343941038,0.393364276848904,0,0.309632246632152,0,0,0,0.154934401160603,0.142169232487422,0,6.09394949385065,0.401088894940283,0.868043482863407,0,0,0.515151135268373,0.290796477559129,0.377875943688809,0.485168122375632,0,0,0,0,0,0.236482229888585,0.344745680736619,0,1.35426486594342,0.188242339542605,0.272906150057846,0.224723484445085,0.306083892370903,0.320929027076094,3.19668562899521,0.329851300186716,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0,0,0.949387162322653,0,0.212604299965044,1.04829322754188,0.22465726229299,0.600707571366025,0.64290234678832,0.570025487482497,0,0.730656615058536,0,1.63841583378639,0,0,0,0,0,0,2.27685187643779,1.76171156811282,0.382273228125229,0,1.12101712596307,0.263384084775077,0.786839080455332,1.17903228824749,0.822405995998037,0,0.32592226663359,0,0,0,0.589211814949674,0,1.08321545506006,0,0.390178042679635,0.493313713811028,0.829050053357545,0,0.296573126324121,0.267540828089713,1.04535523804977,0.113309342697566,0,0.34362744548263,0.253019692019503,0.318565414324097,0,0,0.150575119077773,0,0,0.236777252044017,0,3.22570789159572,2.40696176205157,0.144824403882799,0,0,0,0.722878304769133,0,0,0,0,0.0945348171640679,0.221729397462564,0,0.196468613246569,0,0.370784442784429,0,0.174129737299267,0.26591592103773,0.715471872916026,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0.624320153660641,0,0,0,0,0.280901613404497,0,0,0,0,0,0,0,0,0.375355559615893,0,0,0,0,0,0.179389635688862,0,0.211931901159562,0,0,0.772921620136887,0,0.337552664482532,0,0.504867548488229,0.0920498986422993,0,0,0,0,0,0,0,0,0.265059536642971,0,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0.882926198829301,0.368965315629341,0,0,0,0.100528972411631,0,0,0,0,0.231860809950154,0,0.433099343283221,0,0.190254152234598,0,0,0,0,0.297262324577456,0,0,0,0,0,0,0.492663237895943,0.176096868026452,0.207328115540772,0.576479813667846,0,0.126995788584338,0,0,0,0,0,0,0,0.43596006883328,0.07333828582095,0.258543431515556,0,0,0,1.04007436911366,0,0,0,0,0,0.823240336780769,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.289562613335158,0,0,1.56919201590938,2.95546140302891,1.72502059887614,0.898401253958239,0.254094624222463,0,0,0.167516265334349,0,0.749007023947182,2.99161459204025,0,0.12269149171914,0.500170521059677,0.271265023699736,0.207970861530807,0.178428988797162,0.315404830067869,0,0,0,0,0,0,0,0.195801157462741,0,0.620304078368662,1.50999940573032,0.853820462427555,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0.219259876645935,0.261435451024901,0,0,0,0.206082023295445,0.183138929636687,0.247528499761764,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0.435050081742686,0,0,0.165284915360978,0.192190067365106,0,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0.318203247925937,0.78494864019923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0.507447609232169,0.764637207142375,0,0,0,1.29694662238543,0,0.79312517629427,0.106824071127473,0,0,0.185803175125719,0.144269212976445,0.426851060090485,0.318852545457645,0,0,0.635020748171649,0,0,0,0.156679895773023,0,0.50787533340481,0.1605880751037,0,0.425846237690326,0,0.921722292925374,0.447352215784832,0.333698283423817,0,0,0,0,0.33307196799782,0,0.37428108081644,0.146508179271894,0,0.111443384277478,0,0.23874448473769,0.296964680832639,0.307160702099232,0,0.844016498463076,0.111308705022906,0.16480387422676,1.05562704063997,0,0.276283915531148,0.503865495708552,0.102268682502155,0.369254416383208,0,0,0,0.511572370226872,0,0,0,0,0,0,0.260427761085233,0.0874599999961957,0,0.1137934482855,0,0.236387681767936,0,0.291604613383254,0.173624994933292,0.885741385813839,0.482385754501632,0,0.663475559587348,0,0,0,0.139423744278603,0.0769502585037971,0,0.69169171316418,0,0,0,0,0,0,0,0.498635045700469,0.451191321234361,0.392125068635479,0,0,0.317873157960757,0.421996129056054,0,0.141353071433941,0.432777279484182,0,0.353830258013357,1.22206028986725,0.296521128680622,0.494255755786011,0.522109747527277,0.471807930864739,0,0.468528891450678,0.182454789215666,0.19566461893209,0.485560759068186,0.394584402849391,0,0.30607276163049,0.505492637027904,0.150323419414493,0.103688191397247,0,0,0,0,0,0.138674673013139,0,0.391969589657511,0,0,0,0.0967563312890851,0.0730893170861856,0,0.0969890164884194,0.706049013532002,0.225980740780532,0,0,0.379864775735272,0,0.160317640503067,0,0,0,0.114536596165916,0,0,0,0,0,0.209205692624666,0,0,0,1.64286454670392,0,0,0.525774708558629,0,0.229160424011684,2.15361907373044,0,0,0.223171457441873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| ||
|short_description=p@chr6:109696817..109696821,- | |||
}} | }} |
Latest revision as of 18:09, 30 July 2015
Short description: | p@chr6:109696817..109696821, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:109696817..109696821, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 5.92e-09 | 3 |
pro-NK cell | 5.92e-09 | 3 |
lymphoid lineage restricted progenitor cell | 1.04e-07 | 52 |
leukocyte | 1.21e-07 | 136 |
lymphocyte | 1.55e-07 | 53 |
common lymphoid progenitor | 1.55e-07 | 53 |
innate effector T cell | 3.82e-07 | 1 |
immature NK T cell | 3.82e-07 | 1 |
effector T cell | 3.82e-07 | 1 |
mature NK T cell | 3.82e-07 | 1 |
immature NK T cell stage IV | 3.82e-07 | 1 |
immature NK T cell stage I | 3.82e-07 | 1 |
immature NK T cell stage II | 3.82e-07 | 1 |
immature NK T cell stage III | 3.82e-07 | 1 |
nongranular leukocyte | 4.74e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
tricuspid valve | 2.37e-07 | 1 |
right atrium valve | 2.37e-07 | 1 |
outflow tract of atrium | 2.37e-07 | 1 |
outflow part of right atrium | 2.37e-07 | 1 |
right cardiac atrium | 2.37e-07 | 1 |
substantia nigra | 2.52e-07 | 1 |
midbrain nucleus | 2.52e-07 | 1 |
regional part of midbrain | 2.52e-07 | 1 |
midbrain | 2.52e-07 | 1 |
presumptive midbrain | 2.52e-07 | 1 |
midbrain neural tube | 2.52e-07 | 1 |
vagina | 4.85e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 7.73e-07 | 1 |