FFCP PHASE1:Hg19::chr7:55543402..55543436,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:55543402..55543436,+ | |||
|coexpression_cluster_id=C476 | |coexpression_cluster_id=C476 | ||
|description=CAGE_peak_at_chr7:55543402..55543436,+ | |description=CAGE_peak_at_chr7:55543402..55543436,+ | ||
|id=chr7:55543402..55543436,+ | |id=chr7:55543402..55543436,+ | ||
|ontology_enrichment_celltype=CL:0000791!1.46e-32!18;CL:0000789!1.46e-32!18;CL:0002420!1.46e-32!18;CL:0002419!1.46e-32!18;CL:0000790!1.46e-32!18;CL:0000084!7.90e-23!25;CL:0000827!7.90e-23!25;CL:0000625!1.56e-22!11;CL:0000838!4.15e-16!52;CL:0000542!9.52e-16!53;CL:0000051!9.52e-16!53;CL:0000623!4.92e-15!3;CL:0000825!4.92e-15!3;CL:0000624!1.11e-13!6;CL:0002087!2.32e-08!119;CL:0000898!9.55e-08!3;CL:0000842!2.06e-07!3 | |ontology_enrichment_celltype=CL:0000791!1.46e-32!18;CL:0000789!1.46e-32!18;CL:0002420!1.46e-32!18;CL:0002419!1.46e-32!18;CL:0000790!1.46e-32!18;CL:0000084!7.90e-23!25;CL:0000827!7.90e-23!25;CL:0000625!1.56e-22!11;CL:0000838!4.15e-16!52;CL:0000542!9.52e-16!53;CL:0000051!9.52e-16!53;CL:0000623!4.92e-15!3;CL:0000825!4.92e-15!3;CL:0000624!1.11e-13!6;CL:0002087!2.32e-08!119;CL:0000898!9.55e-08!3;CL:0000842!2.06e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000625;2.60e-24;11!CL:0000791;5.10e-15;18!CL:0000789;5.10e-15;18!CL:0002419;5.10e-15;18!CL:0000084;6.57e-11;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,3.75e-24,11;CL:0000791,6.35e-15,18;CL:0000789,6.35e-15,18;CL:0002420,6.35e-15,18;CL:0002419,6.35e-15,18;CL:0000790,6.35e-15,18;CL:0000084,7.69e-11,25;CL:0000827,7.69e-11,25 | |||
|ontology_enrichment_development_v019=CL:0000790;5.10e-15;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.30e-20!15;UBERON:0000179!1.30e-20!15;UBERON:0000463!1.30e-20!15;UBERON:0002370!1.54e-12!4;UBERON:0005058!1.54e-12!4;UBERON:0009113!1.54e-12!4;UBERON:0003295!1.54e-12!4;UBERON:0005562!1.54e-12!4;UBERON:0004177!5.90e-12!7;UBERON:0003351!1.66e-08!6 | |ontology_enrichment_uberon=UBERON:0000178!1.30e-20!15;UBERON:0000179!1.30e-20!15;UBERON:0000463!1.30e-20!15;UBERON:0002370!1.54e-12!4;UBERON:0005058!1.54e-12!4;UBERON:0009113!1.54e-12!4;UBERON:0003295!1.54e-12!4;UBERON:0005562!1.54e-12!4;UBERON:0004177!5.90e-12!7;UBERON:0003351!1.66e-08!6 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.58e-34;2!UBERON:0005058;2.58e-34;2!UBERON:0009113;2.58e-34;2!UBERON:0004177;2.25e-14;5!UBERON:0005057;2.25e-14;5!UBERON:0002390;2.20e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.04e-18,4;UBERON:0005058,8.04e-18,4;UBERON:0009113,8.04e-18,4;UBERON:0003295,8.04e-18,4;UBERON:0005562,8.04e-18,4;UBERON:0003351,3.26e-12,6;UBERON:0004177,1.33e-10,7;UBERON:0005057,1.33e-10,7;UBERON:0000974,1.09e-07,10;UBERON:0003408,1.09e-07,10;UBERON:0001042,1.09e-07,10;UBERON:0009145,1.09e-07,10;UBERON:0006562,4.57e-07,11;UBERON:0009722,4.57e-07,11;UBERON:0007690,4.57e-07,11 | |||
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|short_description=p@chr7:55543402..55543436,+ | |short_description=p@chr7:55543402..55543436,+ | ||
}} | }} |
Latest revision as of 10:49, 31 July 2015
Short description: | p@chr7:55543402..55543436, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:55543402..55543436, + |
Coexpression cluster: | C476_thymus_acute_Hodgkin_CD4_CD8_chronic_vein |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 3.75e-24 | 11 |
mature alpha-beta T cell | 6.35e-15 | 18 |
alpha-beta T cell | 6.35e-15 | 18 |
immature T cell | 6.35e-15 | 18 |
mature T cell | 6.35e-15 | 18 |
immature alpha-beta T cell | 6.35e-15 | 18 |
T cell | 7.69e-11 | 25 |
pro-T cell | 7.69e-11 | 25 |
Ontology term | p-value | n |
---|---|---|
thymus | 8.04e-18 | 4 |
hemolymphoid system gland | 8.04e-18 | 4 |
thymic region | 8.04e-18 | 4 |
pharyngeal gland | 8.04e-18 | 4 |
thymus primordium | 8.04e-18 | 4 |
pharyngeal epithelium | 3.26e-12 | 6 |
hemopoietic organ | 1.33e-10 | 7 |
immune organ | 1.33e-10 | 7 |
neck | 1.09e-07 | 10 |
gland of gut | 1.09e-07 | 10 |
chordate pharynx | 1.09e-07 | 10 |
pharyngeal region of foregut | 1.09e-07 | 10 |
pharynx | 4.57e-07 | 11 |
entire pharyngeal arch endoderm | 4.57e-07 | 11 |
early pharyngeal endoderm | 4.57e-07 | 11 |