FFCP PHASE1:Hg19::chr9:112261641..112261646,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:112261641..112261646,+ | |||
|coexpression_cluster_id=C981 | |coexpression_cluster_id=C981 | ||
|description=CAGE_peak_at_chr9:112261641..112261646,+ | |description=CAGE_peak_at_chr9:112261641..112261646,+ | ||
|id=chr9:112261641..112261646,+ | |id=chr9:112261641..112261646,+ | ||
|ontology_enrichment_celltype=CL:0002541!4.06e-15!3;CL:0002536!4.59e-10!2;CL:0002537!3.92e-09!5 | |ontology_enrichment_celltype=CL:0002541!4.06e-15!3;CL:0002536!4.59e-10!2;CL:0002537!3.92e-09!5 | ||
|ontology_enrichment_celltype_v019=CL:0002541;5.49e-55;3!CL:0000349;4.52e-34;19!CL:0002537;6.31e-33;5!CL:0000039;2.55e-11;7!CL:0000586;2.55e-11;7!CL:0000134;1.36e-08;55!CL:0000723;6.19e-08;61!CL:0000239;3.06e-07;3!CL:1000615;3.06e-07;3!CL:0002306;3.06e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.02e-55,3;CL:0000349,4.79e-34,19;CL:0002537,6.67e-33,5;CL:0000039,2.42e-11,7;CL:0000586,2.42e-11,7;CL:0000239,3.35e-07,3;CL:1000615,3.35e-07,3;CL:0002306,3.35e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;4.28e-19;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;2.25e-19;1!DOID:10165;2.25e-19;1!DOID:1798;2.25e-19;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.88e-19,1;DOID:10165,1.88e-19,1;DOID:1798,1.88e-19,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.53e-31!14;UBERON:0000158!1.53e-31!14;UBERON:0000478!1.49e-17!24;UBERON:0003124!1.14e-16!7;UBERON:0000305!1.57e-16!7;UBERON:0000476!4.06e-15!3;UBERON:0000920!4.06e-15!3;UBERON:0004871!1.99e-14!8;UBERON:0004923!4.42e-09!57 | |ontology_enrichment_uberon=UBERON:0005631!1.53e-31!14;UBERON:0000158!1.53e-31!14;UBERON:0000478!1.49e-17!24;UBERON:0003124!1.14e-16!7;UBERON:0000305!1.57e-16!7;UBERON:0000476!4.06e-15!3;UBERON:0000920!4.06e-15!3;UBERON:0004871!1.99e-14!8;UBERON:0004923!4.42e-09!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.34e-64;10!UBERON:0000158;1.34e-64;10!UBERON:0003124;5.49e-55;3!UBERON:0000920;5.49e-55;3!UBERON:0000478;2.02e-36;24!UBERON:0000305;9.39e-24;7!UBERON:0006853;3.06e-07;3!UBERON:0007685;3.06e-07;3!UBERON:0004134;3.06e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.95e-62,14;UBERON:0000158,1.95e-62,14;UBERON:0000920,6.02e-55,3;UBERON:0003124,1.49e-41,7;UBERON:0000478,2.07e-36,24;UBERON:0000305,9.77e-24,7;UBERON:0004871,7.25e-21,8;UBERON:0004923,4.17e-13,66;UBERON:0006853,3.35e-07,3;UBERON:0007685,3.35e-07,3;UBERON:0004134,3.35e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,1.01950509218015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,1.48482340416319,4.30024982938925,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,1.84451123510448,7.18061155278177,0,5.42301971544263,2.10674464824283,7.99552164027952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0.971121518136371,0.394584402849391,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.391102765469606,0,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3571602503328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50794029276486,0,0,0,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0.452888530700021,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0,0,0,0,0.308061348417659,0,0,0.105551628892876,0,0,0,0,0,0,1.01950509218015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,1.48482340416319,4.30024982938925,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,1.84451123510448,7.18061155278177,0,5.42301971544263,2.10674464824283,7.99552164027952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0.971121518136371,0.394584402849391,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0.391102765469606,0,0,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3571602503328,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50794029276486,0,0,0,0,0,0,0,0,0.560544326627578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0.452888530700021,0,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.213233981900981,0,0,0.0620747142958579,0,0,0,0,0,0.202056159043763,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr9:112261641..112261646,+ | |short_description=p@chr9:112261641..112261646,+ | ||
}} | }} |
Latest revision as of 21:35, 31 July 2015
Short description: | p@chr9:112261641..112261646, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:112261641..112261646, + |
Coexpression cluster: | C981_choriocarcinoma_chorionic_pancreatic_placenta_amniotic_vagina_MCF7 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.02e-55 | 3 |
extraembryonic cell | 4.79e-34 | 19 |
amnion mesenchymal stem cell | 6.67e-33 | 5 |
germ line cell | 2.42e-11 | 7 |
germ cell | 2.42e-11 | 7 |
brush border epithelial cell | 3.35e-07 | 3 |
kidney cortex tubule cell | 3.35e-07 | 3 |
epithelial cell of proximal tubule | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.95e-62 | 14 |
membranous layer | 1.95e-62 | 14 |
egg chorion | 6.02e-55 | 3 |
chorion | 1.49e-41 | 7 |
extraembryonic structure | 2.07e-36 | 24 |
amnion | 9.77e-24 | 7 |
somatic layer of lateral plate mesoderm | 7.25e-21 | 8 |
organ component layer | 4.17e-13 | 66 |
renal cortex tubule | 3.35e-07 | 3 |
region of nephron tubule | 3.35e-07 | 3 |
proximal tubule | 3.35e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.88e-19 | 1 |
endocrine pancreas cancer | 1.88e-19 | 1 |
pancreatic endocrine carcinoma | 1.88e-19 | 1 |